Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20700
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)             145   3e-35
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)                   31   0.53 
SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)                    29   3.8  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         27   8.7  
SB_739| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.7  
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      27   8.7  
SB_7073| Best HMM Match : ResIII (HMM E-Value=0.083)                   27   8.7  

>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score =  145 bits (351), Expect = 3e-35
 Identities = 66/114 (57%), Positives = 81/114 (71%)
 Frame = +3

Query: 255 LAESVDIXXXXXXXXXXENALDDKSAARLSLVRTFEEERWSRGRCVTCLDWSTFHPELVL 434
           L E +DI          +     ++A  L+L R F +ERWSR R VTCLDWS  +PEL++
Sbjct: 201 LTEDLDITIDYSGAEGDDLEGGSQAARELTLSRDFYDERWSRHRTVTCLDWSNQYPELLV 260

Query: 435 ASYYNSDDAPHDPDGVCLVWNTKFKRPLPEDIFHCQSAVMSATFAKFHPNLILG 596
           ASY N++DAPH+PDGV L+WN KF +  PE IFHCQSAVMSATFAKFHPNLI+G
Sbjct: 261 ASYNNNEDAPHEPDGVALIWNLKFAKTTPEYIFHCQSAVMSATFAKFHPNLIIG 314



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +1

Query: 160 VRELSADEKQTIMLSAEFQRFMSRAGRVIERA 255
           V ELS ++K  I+ S EF RF  +A R++ERA
Sbjct: 169 VIELSEEQKDQILGSQEFSRFFDKAVRLVERA 200


>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
          Length = 736

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query: 381 GRC--VTCLDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKRPLPEDIFHCQSAVM 554
           G C  VT L WS  HP+ ++ S Y         DG   VW+ +  +P+     H    VM
Sbjct: 20  GHCGRVTALSWSPHHPDRLVTSSY---------DGSAQVWDVETNQPIANYRGHV-GRVM 69

Query: 555 SATFAKFHPNLI 590
           S  ++   P+++
Sbjct: 70  SVCWSYLDPDVV 81


>SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)
          Length = 703

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 447 CSTRPAPVPGETWTSPGRSRIGRATS 370
           CS   +P P  TWTSP    +G  TS
Sbjct: 208 CSADGSPSPTITWTSPQGHMVGHGTS 233


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 435 PAPVPGETWTSPGRSRIGRATSVPLRRYEPGKDG 334
           P  VPGE+WTS G  +I +    P     PG DG
Sbjct: 777 PTGVPGESWTSGGVGQIKQGP--PGDPGNPGTDG 808


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  PSTVNCPRGYCSTACPPSRRSNPQSPMRP 124
           PS+V+ P    +T  PP     P++P RP
Sbjct: 717 PSSVSSPAATSATEKPPPSDKRPETPARP 745


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 483 TLRQGRAARRHCCSTRPAPVPGETWTSPGRSR 388
           +LRQ + A+R C  TRP P P      P  +R
Sbjct: 657 SLRQIQMAKRLCFKTRPLPTPPRPTKRPTPTR 688


>SB_739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 483 TLRQGRAARRHCCSTRPAPVPGETWTSPGRSRIGRATSVPLR 358
           T++Q  AAR H C   P  +  E  T   R  I RA S  L+
Sbjct: 12  TIQQASAARNHNCRLFPDNLGDEARTIAARRHIRRACSNDLQ 53


>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 44   TVNCPRGYCSTA-CPPSRRSNPQSP 115
            T NC + YC TA CP + R     P
Sbjct: 932  TANCTKAYCPTAYCPTANRPTAYCP 956


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 55  PPGILQHGLPTVKEVQPAVTDAPV 126
           PPG  +  LPT     PAVT APV
Sbjct: 310 PPGEKKAPLPTPPSTPPAVTKAPV 333


>SB_7073| Best HMM Match : ResIII (HMM E-Value=0.083)
          Length = 1105

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -3

Query: 489  PGTLR---QGRAARRHCCSTRPAPVPGETWTSPGRSRIGRATSVPL 361
            P T+R      AA R+C   RP PVPG+        + G    VPL
Sbjct: 938  PATIRFDPDPSAAHRYCKQGRPVPVPGKRGEKVDAYK-GTVVEVPL 982


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,380
Number of Sequences: 59808
Number of extensions: 333504
Number of successful extensions: 1003
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)