Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20700
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 79 3e-15
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 4.4
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 4.4
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/85 (42%), Positives = 54/85 (63%)
Frame = +3
Query: 339 LSLVRTFEEERWSRGRCVTCLDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKRPL 518
L L + +++E W+ R VT + +S +P+L+ SY D P++P GV +VWNTK KR
Sbjct: 269 LHLAQVYQDETWTAKRLVTGMAFSEHYPDLLAVSY-GPCDIPNEPPGVIVVWNTKSKRMT 327
Query: 519 PEDIFHCQSAVMSATFAKFHPNLIL 593
E I +CQS + S FA+FH +L+L
Sbjct: 328 AEFIVYCQSEIQSVAFARFHAHLLL 352
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1801 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1832
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1894 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1925
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1707 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1738
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1894 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1925
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1801 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1832
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1894 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1925
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1707 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1738
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1894 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1925
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRS 391
TW +PG Q R C T +P P TWT P S
Sbjct: 1893 TWNGKPGERHQFR------CITTGSPTPKITWTGPNGS 1924
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,929,878
Number of Sequences: 27780
Number of extensions: 233168
Number of successful extensions: 759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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