Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20700
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    26   0.24 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    26   0.24 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.2  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 29  RRPPSTVNCP--RGYCSTACPPSRRSNPQSPM 118
           R+P     C    G+CS  C P+ R N +SP+
Sbjct: 28  RQPDGMNQCQAVNGHCSHLCLPAPRINSKSPL 59


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 29  RRPPSTVNCP--RGYCSTACPPSRRSNPQSPM 118
           R+P     C    G+CS  C P+ R N +SP+
Sbjct: 28  RQPDGMNQCQAVNGHCSHLCLPAPRINSKSPL 59


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = +2

Query: 521 RRH--IPLSVGGYERHVCEV 574
           +RH  I LS G Y R  CE+
Sbjct: 195 QRHSTIHLSTGNYSRLACEI 214


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 354 YEPGKDGPLTCRQARF 307
           Y P  DGP  C  ARF
Sbjct: 434 YLPFGDGPRNCIGARF 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,246
Number of Sequences: 438
Number of extensions: 2916
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)