Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20700
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52000.1 68414.m05866 jacalin lectin family protein similar t...    30   1.0  
At3g62370.1 68416.m07006 expressed protein                             29   2.4  
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ...    28   4.1  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   4.1  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    27   7.2  
At1g67310.1 68414.m07661 calmodulin-binding protein similar to a...    27   7.2  

>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296,
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile: PF01419
           jacalin-like lectin domain
          Length = 730

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 435 PAPVPGETWTSPGRSRIGR-ATSVPLRRYEPGKDG 334
           PAP PG T   PG S IG  + S+      PG DG
Sbjct: 126 PAPPPGSTGAKPGASGIGSDSGSIGSAGTNPGADG 160


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 402 DW--STFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKRPL 518
           DW  + +H      S Y  +D+P+ PDG    +  +F RPL
Sbjct: 214 DWHGAWWHSSFTTLSGYVEEDSPYTPDGKKGTYYFEFSRPL 254


>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 411 TFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKRPLPEDIFHC 539
           T HP+  L  +  S++AP   D  CL+   +F +  P+ I HC
Sbjct: 179 TSHPQHTL-KHITSEEAPDYADNKCLLCEEEFDQQHPK-IHHC 219


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 438 RPAPVPGETWTSPGRSRIGRATSVPLRRYEPGKDGP 331
           +PAPV   +  +  R  + R   +P R+Y PG++GP
Sbjct: 708 KPAPVRISSLLT-SRHLLHRRVRLPARKYRPGENGP 742


>At2g27390.1 68415.m03306 proline-rich family protein contains
          proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 17 KETTRRPPSTVNCPRGYCSTACPP 88
          KE + R PS  N P G   T CPP
Sbjct: 7  KEYSIRTPSLGNLPPGTTGTCCPP 30


>At1g67310.1 68414.m07661 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1035

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 575 ELRKRGAHNRRLTVEYVFGEWSF 507
           E+R  GAHN++ T++ +  +W +
Sbjct: 454 EMRVTGAHNQKFTIQDISPDWGY 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,472,787
Number of Sequences: 28952
Number of extensions: 216181
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)