Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20699
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.86 
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   8.0  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +1

Query: 346 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVIC 492
           HL     AF  L  PK   E++    +    C   + NP  +   FV C
Sbjct: 229 HLKKGEVAFTELAPPKLPFEINVSTTDICKICGEKIKNPAVLSTGFVFC 277


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 352 ASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTV 450
           ++K+P  I  L+  G+L V  +  + YPY +TV
Sbjct: 331 SAKMPVLIEDLSFTGNLRVKVKLIDKYPYAKTV 363


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 448 VLTNPGYMKENFVICIESLHY 510
           VLTNPG +K  + +C++   Y
Sbjct: 174 VLTNPGAVKRTYNLCLDISKY 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,071
Number of Sequences: 5004
Number of extensions: 64488
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)