Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20699
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0616 - 9874882-9874974,9875067-9875189,9875284-9875379,987...    67   1e-11
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     28   6.3  
06_02_0172 + 12594542-12596083                                         28   6.3  
05_06_0121 - 25762247-25762876,25762961-25763134,25763899-25764186     28   6.3  
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890...    28   8.3  
02_01_0745 - 5550472-5551053                                           28   8.3  

>03_02_0616 -
           9874882-9874974,9875067-9875189,9875284-9875379,
           9875457-9875666,9875718-9875812,9876032-9876123,
           9876539-9876660
          Length = 276

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/72 (47%), Positives = 47/72 (65%)
 Frame = +1

Query: 232 QK*NRRRRGIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSLEVH 411
           Q+    + G+EV++  PF+D  L  GK   GQYT K YHL SK+P++++  AP  +L VH
Sbjct: 5   QQNTNSKEGVEVLQQVPFEDEKL--GK---GQYTSKNYHLQSKIPSWMKGFAPASALTVH 59

Query: 412 EEAWNAYPYCRT 447
           EE+W AYP  RT
Sbjct: 60  EESWCAYPNSRT 71


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 475 LSCNRDSSVLFYSTGRRSTLLRVLREILSEQ 383
           + C  D S + ++TG  STLL  L E+L EQ
Sbjct: 1   MPCLSDPSGMEFATGVMSTLLSKLAELLKEQ 31


>06_02_0172 + 12594542-12596083
          Length = 513

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 346 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVL 453
           H+  K+ A +R + PKG   V EE     PY + V+
Sbjct: 333 HVMGKLQAEVRRVMPKGQDIVTEEQLGCMPYLKAVI 368


>05_06_0121 - 25762247-25762876,25762961-25763134,25763899-25764186
          Length = 363

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 565 PASGPHRHCERPPPVGRLQ 621
           P S PH +C +PPP   LQ
Sbjct: 226 PLSSPHLYCYKPPPSRHLQ 244


>02_04_0203 -
           20888010-20888162,20888242-20888469,20888969-20889073,
           20889148-20889225,20889308-20889382,20890037-20890123,
           20890216-20890283,20890396-20890483,20890583-20890683,
           20890793-20890913,20891008-20891169,20891271-20891441
          Length = 478

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 554 ETKDPRVVPIDIANDPLPSADYKSETDPT 640
           E KDP   P   A  P P  + K E +PT
Sbjct: 363 EEKDPEPAPAPAAAPPPPPVEEKKEAEPT 391


>02_01_0745 - 5550472-5551053
          Length = 193

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 620 CSRPTGGGRSQCLWGPL 570
           CSRPT GGR   +W  L
Sbjct: 12  CSRPTSGGRLSAVWAHL 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,313,244
Number of Sequences: 37544
Number of extensions: 453794
Number of successful extensions: 1168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)