Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20699
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_16126| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 29 4.9
SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_44855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 28 8.5
SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035) 28 8.5
>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 105 bits (252), Expect = 3e-23
Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 GIEVIKNEPFKDYPLLGGK--YSSGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNA 429
GIEV+KNEP+ + G GQYT KI HL SKVP +I LAP+G+LEVHEEAWNA
Sbjct: 39 GIEVVKNEPYVEGKGEFGNDVTEPGQYTLKIMHLKSKVPQWIVKLAPEGALEVHEEAWNA 98
Query: 430 YPYCRTVLTNPGYMKENFVICIESLHYRTPGT 525
YPYC+TV TNP YM ENF + I++ H P +
Sbjct: 99 YPYCKTVYTNP-YMGENFHVIIKTWHKEGPSS 129
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 152 IKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGE 256
+KEYRV LP++VE Y++AQLY V E S NETGGGE
Sbjct: 4 LKEYRVELPISVENYRIAQLYTVTEASMNETGGGE 38
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 572 VVPIDIANDP--LPSADYKSETDPTKFKSTKTGRGPLVGPNW 691
V+ IDIA + + DYK + DP +S K GPL P+W
Sbjct: 147 VIDIDIAAEKKLVGPHDYKEDEDPLLVRSEKANCGPLT-PDW 187
>SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 100 bits (239), Expect = 1e-21
Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 GIEVIKNEPFKDYPLLGGKYS----SGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAW 423
GIEV+ NEP+ GK GQYT+K+ HL SKVP+F+R+LAP GSLEVHE+AW
Sbjct: 39 GIEVLVNEPYTAGEGGHGKNMPPGMDGQYTHKLIHLHSKVPSFVRMLAPSGSLEVHEKAW 98
Query: 424 NAYPYCRTVLTNPGYMKENFVICIESLH 507
NAYP+CRT +N YMKE+F + I++ H
Sbjct: 99 NAYPFCRTEYSNT-YMKEHFSVIIDTWH 125
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = +2
Query: 146 MIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGE 256
++IKEYR+ LP++VEEYQ+AQLY VAE SKNETGGGE
Sbjct: 2 VVIKEYRIPLPISVEEYQIAQLYAVAEASKNETGGGE 38
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 554 ETKDPRVVPIDIANDPLPSADYKSETDPTKFKSTKTGRGPL 676
E + +V IDI ND + +YK++ DP+K S K RGPL
Sbjct: 143 ELQKREIVNIDIVNDKVDPHEYKADEDPSKVGSEKAKRGPL 183
>SB_16126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 468 HERKLRYMYRIAALPDAGDQYNVHELPPE 554
HE + Y+Y +A D G ++N+ ++PP+
Sbjct: 253 HEDEHGYVYNVAVTMDKGTRFNIVKIPPD 281
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 527 IQCPRAAA*ETKDPRVVPIDIANDPLPSADYKSETD 634
++C + E + V+P+DIA D LP Y +E D
Sbjct: 725 VKCFNLSPEELESREVIPVDIAFDELPEKYYVAEED 760
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 249 PPVSFLE-TSATQYNWAT*---YSSTVRGSVTRYSLIIMFNYFFT*MHMKLSTN 100
PP F T+ T Y T Y++TV ++T Y+ I N + T ++ ++TN
Sbjct: 378 PPTDFTTITTITNYTTTTTITNYTTTVSTTITNYTTTITINNYTTTVNTTITTN 431
>SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 385 APKGSLEVHEEAWNAYPYCRTVLTNP 462
+PK L +H W+ CRTVLT P
Sbjct: 528 SPKMILRLHNLCWHHAILCRTVLTPP 553
>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 468 VTGIRQYCSTVRVGVPRFFVYFERSFRSK*PDEGRNFGRQMVDLVRVLSRRVFSTEQ 298
VT ++C TV+ +P+ Y RS PD R R + L ++++ +++
Sbjct: 99 VTTTPRHCRTVQPTIPKDIRYQFRSAEEDKPDSRRRINRSR-SFINTLPKQIYESDE 154
>SB_44855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 353 AKW*ILYVYCPDEYFPPSSG 294
+KW I Y PD YFPP G
Sbjct: 124 SKWAISKAYFPDYYFPPFCG 143
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 521 GPIQCPRAAA*ETKDPRVVPIDIANDPLPSADYKSET 631
GP Q P E DP P + DP P+ DY+ T
Sbjct: 279 GPGQDP--CGNEDPDPTANPFGVTTDPFPTDDYQQPT 313
>SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035)
Length = 624
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 424 NAYPYCR--TVLTNPGYMKENFVICIESLHYRTPGTNTMSTSCRLRN*RPASGPH 582
NAY + R T TN G+ + N + + H+R PGT T ++ N P + H
Sbjct: 142 NAYHHTRPETPTTNSGFSQLN-IYPRNAYHHRRPGTPTTNSGLSQLNIYPRNAYH 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,415,275
Number of Sequences: 59808
Number of extensions: 496762
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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