Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20699
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024814-2|AAK68521.2|  259|Caenorhabditis elegans Hypothetical ...   144   5e-35
AC025726-7|AAK73916.2|  272|Caenorhabditis elegans Hypothetical ...    97   1e-20
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    88   5e-18
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    88   5e-18
Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z92830-2|CAB07355.2|  330|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC024814-2|AAK68521.2|  259|Caenorhabditis elegans Hypothetical
           protein Y54F10AR.1 protein.
          Length = 259

 Score =  144 bits (349), Expect = 5e-35
 Identities = 60/90 (66%), Positives = 75/90 (83%)
 Frame = +1

Query: 256 GIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYP 435
           G+EV+KNEPF + PLL G+++ GQYT+KIYHL SKVPA +R +APKGSL +HEEAWNAYP
Sbjct: 27  GVEVLKNEPFDNVPLLNGQFTKGQYTHKIYHLQSKVPAILRKIAPKGSLAIHEEAWNAYP 86

Query: 436 YCRTVLTNPGYMKENFVICIESLHYRTPGT 525
           YC+TV+TNP YMKENF + IE++H    GT
Sbjct: 87  YCKTVVTNPDYMKENFYVKIETIHLPDNGT 116



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
 Frame = +2

Query: 572 VVPIDIANDP--LPSADYKSETDPTKFKSTKTGRGPLVGPNWKNDVK 706
           VV I+IAND   L S D   ++ P+KF+STKTGRGPL G NWK+ V+
Sbjct: 133 VVNINIANDHEYLNSGDLHPDSTPSKFQSTKTGRGPLSG-NWKDSVQ 178



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +2

Query: 179 LTVEEYQVAQLYCVAEVSKNETGGGE 256
           ++VEEYQV QL+ VAE SK ETGGGE
Sbjct: 1   MSVEEYQVGQLWSVAEASKAETGGGE 26


>AC025726-7|AAK73916.2|  272|Caenorhabditis elegans Hypothetical
           protein Y71G12B.17 protein.
          Length = 272

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +1

Query: 256 GIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYP 435
           G+E +  E F    L  G+  SG YT KIY L SK P  ++ L P  +  ++EE+WNAYP
Sbjct: 38  GVEFLVQEDFTSNTLRPGQTVSGTYTKKIYRLRSKAPWVLQKLLPPEAFVIYEESWNAYP 97

Query: 436 YCRTVLTNPGYMKENFVICIESLHYRTPGTN 528
           YC+TVLTNPGYMK+NF   IE++H    G++
Sbjct: 98  YCKTVLTNPGYMKDNFHQIIETIHLDDNGSS 128



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +2

Query: 146 MIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGE 256
           MI+KEYR+ LPLTV+E++   LY V+  S+NETGGGE
Sbjct: 1   MIVKEYRIPLPLTVDEFERGLLYAVSACSRNETGGGE 37


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 41/89 (46%), Positives = 61/89 (68%)
 Frame = +1

Query: 256 GIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYP 435
           G+E+I N+P+ D P  GG   SGQYT+KIYH+ S++PA+IR + P  +LE HEE+WNAYP
Sbjct: 39  GVEIISNKPYTDGP--GG---SGQYTFKIYHIGSRIPAWIRTVLPTNALEAHEESWNAYP 93

Query: 436 YCRTVLTNPGYMKENFVICIESLHYRTPG 522
             +T  + P  M + F + +E+L++   G
Sbjct: 94  VTKTRYSTP--MMDRFSLEVETLYFDDHG 120



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/38 (47%), Positives = 31/38 (81%)
 Frame = +2

Query: 146 MIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEA 259
           M+IKEYR+ LP+TV+EY++AQLY + + S+ ++ G ++
Sbjct: 1   MLIKEYRILLPMTVQEYRIAQLYMIQKKSRLDSHGQDS 38



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 560 KDPRVVP-IDIANDPLPSADYKSETDPTKFKSTKTGRGPL 676
           K  R++  +D   DP+ S DY +E DP  ++S  T RGPL
Sbjct: 133 KSTRIIDYMDFVKDPISSHDYCAEEDPKLYRSETTNRGPL 172


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 41/89 (46%), Positives = 61/89 (68%)
 Frame = +1

Query: 256 GIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYP 435
           G+E+I N+P+ D P  GG   SGQYT+KIYH+ S++PA+IR + P  +LE HEE+WNAYP
Sbjct: 39  GVEIISNKPYTDGP--GG---SGQYTFKIYHIGSRIPAWIRTVLPTNALEAHEESWNAYP 93

Query: 436 YCRTVLTNPGYMKENFVICIESLHYRTPG 522
             +T  + P  M + F + +E+L++   G
Sbjct: 94  VTKTRYSTP--MMDRFSLEVETLYFDDHG 120



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/38 (47%), Positives = 31/38 (81%)
 Frame = +2

Query: 146 MIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEA 259
           M+IKEYR+ LP+TV+EY++AQLY + + S+ ++ G ++
Sbjct: 1   MLIKEYRILLPMTVQEYRIAQLYMIQKKSRLDSHGQDS 38



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 560 KDPRVVP-IDIANDPLPSADYKSETDPTKFKSTKTGRGPL 676
           K  R++  +D   DP+ S DY +E DP  ++S  T RGPL
Sbjct: 133 KSTRIIDYMDFVKDPISSHDYCAEEDPKLYRSETTNRGPL 172


>Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical
           protein C35D6.9a protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 318 RVFSTEQWII-FERFILYDLYASPPPVSFLETSATQYNWA 202
           ++FS   +++ F+RFILY + +S P +  ++  A +Y WA
Sbjct: 103 QIFSFLTFLLSFQRFILYFISSSEPYIVQIQKQAPKYIWA 142


>Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical
           protein F39B2.11 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 328 YTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVICIESL 504
           + Y +Y+L  +    +RLLA K   E+ +EA+ A     T L +  +   N    +++L
Sbjct: 133 FPYNLYYLEKRRKKALRLLAGKNDTEILKEAFMALNTLSTKLGDNKFFCGNKPTSLDAL 191


>Z92830-2|CAB07355.2|  330|Caenorhabditis elegans Hypothetical
           protein F11A5.2 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 149 IIKEYRVTLPLTVEEYQVAQLYCVAEVS 232
           I+KE+ V  PL+ + Y V+ L+C+  VS
Sbjct: 84  ILKEFNV--PLSFQSYMVSTLFCMVAVS 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,982
Number of Sequences: 27780
Number of extensions: 373714
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)