Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20699
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14350.3 68416.m01816 leucine-rich repeat transmembrane prote...    28   5.2  
At1g13970.1 68414.m01645 expressed protein                             28   5.2  
At1g12060.1 68414.m01392 IQ domain-containing protein / BAG doma...    27   9.2  

>At3g14350.3 68416.m01816 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 689

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 284 SKIIHCSVEN-TRLDSTRTRSTIWRPKFRPSSG 379
           SKI H   EN T+LD   ++  IW P+ + + G
Sbjct: 467 SKIAHLDHENVTKLDEEESKPLIWNPRVKIALG 499


>At1g13970.1 68414.m01645 expressed protein
          Length = 504

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 272 RMNRSKIIHCSVENTRLDSTRTRSTIWRPK---FRPSSGYLLRKDLSKYTKKRGT 427
           R   SK++  SV  T +DS  T S     +   +RP +G ++++ L +    +G+
Sbjct: 190 RKKSSKVVMVSVRRTSIDSKSTPSEFSSAEKLLYRPKAGSMIQRSLGEKMTSQGS 244


>At1g12060.1 68414.m01392 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 215

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 583 YGDHSRVFSFSGGSSWTLYWSPA 515
           Y D   V S  GG +W LYW  A
Sbjct: 160 YNDLGGVDSGQGGGAWPLYWEEA 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,831
Number of Sequences: 28952
Number of extensions: 343391
Number of successful extensions: 925
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)