Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20698
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 2e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 66 5e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 3e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 1e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 5e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 45 9e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 44 2e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 42 7e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 9e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 9e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 3e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 40 5e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 39 6e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 39 6e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 6e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.023
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.030
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.093
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.093
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 30 0.28
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.6
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 4.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.6
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 8.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 97.5 bits (232), Expect = 2e-21
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 260 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 439
+L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 440 KTMGYKEPTPIQAQGWPIAMSGK 508
K +G++ PTPIQ Q WP+AMSG+
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGR 160
Score = 93.9 bits (223), Expect = 2e-20
Identities = 45/63 (71%), Positives = 49/63 (77%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +R
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
Query: 702 NTC 710
NTC
Sbjct: 226 NTC 228
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.1 bits (154), Expect = 5e-12
Identities = 29/63 (46%), Positives = 43/63 (68%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 702 NTC 710
C
Sbjct: 522 ACC 524
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 433
++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 434 GVKTMGYKEPTPIQAQGWPIAMSGK 508
+ ++GY++PT IQAQ P SG+
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 662
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 341 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVA 671
+QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 668
+++TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 29.9 bits (64), Expect = 0.38
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 368 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 5e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 30.7 bits (66), Expect = 0.21
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
F+ N +++ V G+K+ TP+QA P+ + K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 45.2 bits (102), Expect = 9e-06
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 698
+QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + V
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 699 RN 704
R+
Sbjct: 144 RS 145
Score = 29.9 bits (64), Expect = 0.38
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 502
F+E D + + + +G+K PTPIQ + P+ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLR 169
Query: 702 N 704
+
Sbjct: 170 S 170
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
F+ + + + G+K PTPIQ + P+ + G+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 42.3 bits (95), Expect = 7e-05
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++TGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 698
+SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 699 R 701
+
Sbjct: 214 K 214
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 9e-05
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 332 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 502
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 503 GK 508
G+
Sbjct: 202 GR 203
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 656
++TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 671
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 665
++ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
++TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 698
+++TG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 699 R 701
R
Sbjct: 142 R 142
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 671
TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALG 111
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 356 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQ 662
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 663 QVAADFGHTSYVR 701
+ + F + S+VR
Sbjct: 273 EESRKFCYRSWVR 285
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
R++ G+GKT A+++P++ ++ + + L+L PTRELA Q QV G
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
Score = 31.9 bits (69), Expect = 0.093
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + G+ G++ P+PIQ + PIA+SG+ LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 659
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 33.5 bits (73), Expect = 0.030
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 695
++Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 696 VRNTC 710
+ C
Sbjct: 119 QCHAC 123
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 332 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 481
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.093
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 659
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.093
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 659
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADF 680
++++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARF 142
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 460 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 335
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 320 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 451
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 543 FCRNPFGYAN*IFPDIAIGQP 481
FC NP N +FP IAI P
Sbjct: 50 FCINPKSIRNFLFPPIAISDP 70
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -1
Query: 154 DELSPEFVPPPKF---EPTVSTAIIPITRHDYFSDL 56
DE+S +F+PPP+ TV II + ++ DL
Sbjct: 1080 DEVSDDFIPPPQLLQVGQTVEGVIISLDEANFMVDL 1115
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 320 PYEVEEYRNKHEVTVS 367
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = -2
Query: 231 SALQRILFSHQSLQILQIYCHRCQTETNYRRNLCLLQNL-----NPPFP 100
SAL ++ Q+ LQ + +TN LCL ++ NPPFP
Sbjct: 94 SALCCVVLDKQNFVYLQFWSLNPSKKTNSNSPLCLYEHRLYGIPNPPFP 142
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 653
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 449 PLSLHLVAHNQENL--LLQSIE 390
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,766
Number of Sequences: 5004
Number of extensions: 66509
Number of successful extensions: 228
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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