Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20698
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 4e-14
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 73 2e-13
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 59 3e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 58 9e-09
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 57 1e-08
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 45 5e-05
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 44 1e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 43 3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 7e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 39 0.005
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 39 0.005
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 38 0.008
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 37 0.014
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 37 0.019
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 37 0.019
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 33 0.17
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.23
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.6
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 30 1.6
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 3.7
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.7
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 28 8.6
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 75.4 bits (177), Expect = 4e-14
Identities = 32/89 (35%), Positives = 49/89 (55%)
Frame = +2
Query: 242 PRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 421
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 422 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
+ ++ + Y +PT IQ Q PIA+SG+
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG
Sbjct: 561 AKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +3
Query: 552 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 710
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G +R+TC
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTC 165
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +2
Query: 314 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 481
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFGHT 689
++TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 145 AETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRP 204
Query: 690 SYVR 701
+R
Sbjct: 205 LGIR 208
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 338 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQ 430
+V QPF K+FY P + K +P E +E+R E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 431 QGVKTMGYKEPTPIQAQGWPIAMSGK 508
+K Y++PTPIQAQ P+ MSG+
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 540 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 710
K +Y P + P I G IA+V+ PTRELA QI + F + +R C
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVC 177
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 466
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 467 PIQAQGWPIAMSGK 508
PIQ Q P+ +SG+
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 659
++TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 116 AETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/79 (30%), Positives = 40/79 (50%)
Frame = +2
Query: 272 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 451
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 452 YKEPTPIQAQGWPIAMSGK 508
++ PTPIQ Q MSG+
Sbjct: 92 FQVPTPIQMQSLSCVMSGR 110
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 689
+QTGSGKT AY+LP + + Q P+AL +APTRELA+QI A F HT
Sbjct: 523 AQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHT 579
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 362 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
VSG I F E F + + + GY+ PTP+Q PI M+G+
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 326 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 493
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 494 AMSG 505
G
Sbjct: 197 MAHG 200
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 552 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 659
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 689
+QTGSGKT A++LP + + N P A+ +APTRELA QI A F H
Sbjct: 755 AQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHG 814
Query: 690 SYVR 701
+ +R
Sbjct: 815 TMLR 818
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +2
Query: 332 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGHTSY 695
++Q+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G +
Sbjct: 128 QAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMH 187
Query: 696 VR 701
V+
Sbjct: 188 VK 189
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQI 659
+++TG+GKTL++ LP + + + + +RG P LV+APTRELA+Q+
Sbjct: 116 QARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQV 163
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 686
++TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G+
Sbjct: 94 AKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGN 147
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 389 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
++ F + G+ G+ PT IQ QG P+A+SG+
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGR 88
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAADFGH 686
+QTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A H
Sbjct: 422 AQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH 480
Query: 687 TSYVRN 704
+ R+
Sbjct: 481 HARFRS 486
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +2
Query: 332 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 41.1 bits (92), Expect = 9e-04
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
++TGSGKTLA+++P +V + + + +G ++++PTREL+ Q VA D
Sbjct: 616 AKTGSGKTLAFLVP-VVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARD 666
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++Q+G+GKT + + + I+ Q +R P ALVL+PTRELA QIQ+V G
Sbjct: 40 QAQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALG 89
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G + ++
Sbjct: 325 ARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELGRFTGLK 381
Query: 702 NT 707
++
Sbjct: 382 SS 383
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
R++ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 90 RAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + G+ G+ +P+PIQ + P+A++G+ LA
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILA 89
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
R++ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 90 RAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + G+ G+ +P+PIQ + P+A++G+ LA
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILA 89
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 659
++TGSGKT A+ LP + + + P G A+VL PTRELA QI
Sbjct: 51 AKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELAFQI 91
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 695
+SQ+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H +
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKHCPH 202
Query: 696 VR 701
++
Sbjct: 203 IK 204
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 347 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 502
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 36.7 bits (81), Expect = 0.019
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSY 695
+S+TG+GK+L ++LP++ Q P RG G I ++ PTRELA Q + +V+ G S
Sbjct: 203 KSETGTGKSLVFLLPSV-----QDP-GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSI 254
Query: 696 V 698
V
Sbjct: 255 V 255
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 36.7 bits (81), Expect = 0.019
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 8 AETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 36.3 bits (80), Expect = 0.025
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHIN-------NQPPI-------RRGDGPIALVLAPTRELAQQI 659
++TGSGKTLA+ +P I HI Q P +G +AL++APTRELA Q+
Sbjct: 175 AETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQV 234
Query: 660 Q 662
+
Sbjct: 235 K 235
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 612 PIALVLAPTRELAQQIQQVAADFG 683
P ALVL+PTRELA QIQ+V G
Sbjct: 4 PQALVLSPTRELANQIQKVVLALG 27
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 656
TG+GKT A++LP + + +P + LV+ PTRELA Q
Sbjct: 56 TGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAIQ 96
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 431 QGVKTMGYKEPTPIQAQGWPIAMSGK 508
+ V +G+ PTPIQA P+A+ GK
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGK 48
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 374 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 487
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 389 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
I FE+ + + + V GYK+PTP+Q PI + GK
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPI-VKGK 912
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPP 593
+QTGSGKT A+++P + I + P
Sbjct: 919 AQTGSGKTAAFLIPILSRIYMEGP 942
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -3
Query: 269 VGVKQIPIWASHVLPSREF 213
VGV+ I WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 320 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 451
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 531 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD 677
GSGK LAY+LP I I + +GP+ L+L + ++ V D
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCED 285
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 228 QNMRRPDWDLFHSNLSTKTFMIHILQFSKD 317
+N RR WD FHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 332 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 424
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++++G+GKT + + A+ ++ I + ++L PTRE+A Q++ V G
Sbjct: 56 QAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICAIG 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,698,133
Number of Sequences: 59808
Number of extensions: 486318
Number of successful extensions: 1261
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -