Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20698
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 99 3e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 89 2e-18
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 89 2e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 73 1e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 73 2e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 72 3e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 63 2e-10
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 4e-10
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 58 8e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 9e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 52 5e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 49 4e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 5e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 48 5e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 48 8e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 48 8e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 46 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 3e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 4e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 8e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 43 2e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 43 2e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 4e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 42 4e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 5e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 0.001
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.001
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.002
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.002
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 40 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.003
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.004
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 38 0.007
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 38 0.007
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.009
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 35 0.046
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.046
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 35 0.046
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 35 0.061
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 35 0.061
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.081
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.14
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.14
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 31 0.75
At5g43990.2 68418.m05382 SET domain-containing protein identical... 31 1.00
At5g43990.1 68418.m05383 SET domain-containing protein identical... 31 1.00
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 30 1.7
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 2.3
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 2.3
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 2.3
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 29 4.0
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 29 4.0
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 29 4.0
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 28 5.3
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.3
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.3
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.3
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.0
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.0
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.0
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 27 9.3
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 27 9.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 98.7 bits (235), Expect = 3e-21
Identities = 42/82 (51%), Positives = 54/82 (65%)
Frame = +2
Query: 263 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 442
L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 443 TMGYKEPTPIQAQGWPIAMSGK 508
G+ EPTPIQ+QGWP+AM G+
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGR 137
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/63 (66%), Positives = 52/63 (82%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIK 202
Query: 702 NTC 710
TC
Sbjct: 203 TTC 205
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +2
Query: 242 PRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 421
P+ +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 422 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/63 (61%), Positives = 51/63 (80%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 702 NTC 710
+TC
Sbjct: 269 STC 271
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +2
Query: 242 PRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 421
P+ +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 422 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/63 (61%), Positives = 51/63 (80%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 702 NTC 710
+TC
Sbjct: 269 STC 271
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 73.3 bits (172), Expect = 1e-13
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = +2
Query: 254 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 433
S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 434 GVKTMGYKEPTPIQAQGWPIAMSGK 508
+K Y++PT IQ Q PI +SG+
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/53 (56%), Positives = 40/53 (75%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 680
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIR 632
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +2
Query: 257 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 436
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 437 VKTMGYKEPTPIQAQGWPIAMSGK 508
+K + Y++P PIQ Q PI MSG+
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 72.1 bits (169), Expect = 3e-13
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 659
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +2
Query: 257 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 436
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 437 VKTMGYKEPTPIQAQGWPIAMSGK 508
+K + Y++P PIQAQ PI MSG+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 473 QAQGWPIAMSGK 508
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/63 (49%), Positives = 41/63 (65%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 702 NTC 710
TC
Sbjct: 261 CTC 263
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 473 QAQGWPIAMSGK 508
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/63 (49%), Positives = 41/63 (65%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 702 NTC 710
TC
Sbjct: 261 CTC 263
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 473 QAQGWPIAMSGK 508
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/63 (49%), Positives = 41/63 (65%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 702 NTC 710
TC
Sbjct: 261 CTC 263
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 686
++TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 338 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 499
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGL 348
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +2
Query: 275 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 442
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 443 TMGYKEPTPIQAQGWPIAMSGK 508
+ G+ PTPIQAQ WPIA+ +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
Score = 61.7 bits (143), Expect = 5e-10
Identities = 31/63 (49%), Positives = 42/63 (66%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRIS 537
Query: 702 NTC 710
TC
Sbjct: 538 CTC 540
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/63 (47%), Positives = 39/63 (61%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKIS 331
Query: 702 NTC 710
C
Sbjct: 332 CAC 334
Score = 34.7 bits (76), Expect = 0.061
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 437 VKTMGYKEPTPIQAQGWPIAMSGK 508
V + G+ P+PIQAQ WPIAM +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 332 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 421
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 680
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/75 (33%), Positives = 43/75 (57%)
Frame = +2
Query: 284 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 464 TPIQAQGWPIAMSGK 508
TPIQ QG P+ +SG+
Sbjct: 121 TPIQVQGLPVVLSGR 135
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 680
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 466
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 467 PIQAQGWPIAMSGK 508
PIQ QG P+ ++G+
Sbjct: 171 PIQVQGLPVILAGR 184
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 689
++TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEP 217
Query: 690 SYVRNTC 710
+++ C
Sbjct: 218 CGLKSIC 224
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 499
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 500 SGK 508
G+
Sbjct: 150 DGR 152
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 686
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 446 MGYKEPTPIQAQGWPIAMSGK 508
MG++ PT +QAQ P+ +SG+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 686
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSY 262
Query: 687 TSYVR 701
+ V+
Sbjct: 263 QTGVK 267
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 439
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 440 KTMGYKEPTPIQAQGWPIAMSGK 508
+ Y +PTP+Q PI + G+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 680
R++TG GKTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 665
R++TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 686
S TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 687 TSYVRN 704
+ R+
Sbjct: 215 HARFRS 220
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 686
+QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY 249
Query: 687 TSYVR 701
+ V+
Sbjct: 250 QTGVK 254
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 445
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 446 MGYKEPTPIQAQGWPIAMSGK 508
Y +PTP+Q PI +G+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 686
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 687 TSYVR 701
+ V+
Sbjct: 255 QTGVK 259
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 356 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 502
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 686
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 687 TSYVR 701
+ V+
Sbjct: 255 QTGVK 259
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 356 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 502
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQ 665
R++TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 656
+++TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 659
R++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 31.5 bits (68), Expect = 0.57
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 326 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 505
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 506 K 508
K
Sbjct: 84 K 84
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 689
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +2
Query: 341 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 656
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 656
+++TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 210
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 317 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 490
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 491 IAMSGKI*LA 520
A++GK LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 73
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQ 665
R++TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 656
+++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 671
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
++TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 133 ARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 701
++TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 505
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +2
Query: 359 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 668
TGSGKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 659
+++TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
++TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 198 ARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Score = 30.7 bits (66), Expect = 1.00
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +2
Query: 266 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 445
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 446 MGYKEPTPIQAQGWPIAMSGK 508
MG+ T IQA+ P M G+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGE 192
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 668
S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 665
+QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 102 AQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAE 144
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 495 LCLERFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 656
LC ++TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 689
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVST 116
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 659
+++TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +3
Query: 525 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 659
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + G+ G++ P+PIQ + PIA++G+ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + G+ G++ P+PIQ + PIA++G+ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 671
+QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.1 bits (77), Expect = 0.046
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 665
+QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 53 AQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 374 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 683
++ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.1 bits (77), Expect = 0.046
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
R++ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.7 bits (76), Expect = 0.061
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.7 bits (76), Expect = 0.061
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 677
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 520
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 34.3 bits (75), Expect = 0.081
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 659
+S TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 505
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 618 ALVLAPTRELAQQIQQVAADFG 683
ALVLAPTRELAQQI++V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 618 ALVLAPTRELAQQIQQVAADFG 683
ALVLAPTRELAQQI++V G
Sbjct: 112 ALVLAPTRELAQQIEKVMRALG 133
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 618 ALVLAPTRELAQQIQQVAADFG 683
ALVLAPTRELAQQI++V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
PI+ F++ D V +GV GYK+P+ IQ + + G+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +3
Query: 519 RSQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 689
++Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 690 SYVRNTC 710
+ + C
Sbjct: 118 NIQAHAC 124
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 30.7 bits (66), Expect = 1.00
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 236 ATPRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANF 415
A+P LGS +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 416 PDYVQQGVKTM 448
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 30.7 bits (66), Expect = 1.00
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 236 ATPRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANF 415
A+P LGS +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 416 PDYVQQGVKTM 448
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 269 VGVKQIPIWASHVLPSREFFF 207
VGVK+I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 659
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 659
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 659
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 269 VGVKQIPIWASHVLPSREF 213
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 269 VGVKQIPIWASHVLPSREF 213
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 269 VGVKQIPIWASHVLPSREF 213
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Frame = +3
Query: 522 SQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQ 656
++TGSGKTLA+ LP + + + DG + AL++ PTRELA Q
Sbjct: 235 AETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQ 294
Query: 657 IQQ 665
+ +
Sbjct: 295 VTE 297
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 658 ICCANSLVGAKTKAIGPSPLRI 593
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 278 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 433
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 278 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 433
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 464 TPIQAQGWPIAMS 502
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 464 TPIQAQGWPIAMS 502
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 464 TPIQAQGWPIAMS 502
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 27.5 bits (58), Expect = 9.3
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Frame = -2
Query: 360 VTSCLFLYSSTSYGDLLRTVGCGS*KFLLKGWSETDPNLGV----ACSALQRILFSH--- 202
+TSC ST G+++ + LK E +L + C+ + ++ ++H
Sbjct: 32 LTSCSLCLFSTFLGEIVTRIRYQCMDCGLKLHDECINSLSLNRPFLCNHILKV-YTHIFT 90
Query: 201 QSLQILQIYCHRCQTETNYRRNLCLLQNLNPPFPRLLFQLPDMII 67
S +I + CH CQ++ + C + NLN LF LP + I
Sbjct: 91 SSGRIYENTCHFCQSKLEFLFARCTICNLNVDI-ECLFALPPLTI 134
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 618 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTC 710
AL+L+PTRELA Q ++ G H + + C
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHAC 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,701
Number of Sequences: 28952
Number of extensions: 347148
Number of successful extensions: 1133
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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