Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20697
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 109 4e-25
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 58 8e-10
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 45 8e-06
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 36 0.004
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 33 0.025
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.31
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.72
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 28 1.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.1
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 6.7
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 25 8.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 8.8
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 8.8
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.8
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 109 bits (261), Expect = 4e-25
Identities = 58/122 (47%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Frame = +1
Query: 256 AAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 432
AAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN AN
Sbjct: 38 AAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTAN 97
Query: 433 VIRYFPTQALNFAFKTSTSSVPRRRYKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFGS 612
V+RYFPTQALNFAFK + + ++ + ++F SL FVY LD+
Sbjct: 98 VLRYFPTQALNFAFKDKFKKMFGYKKERDGYAKWFAGNLASGGAAGAASLLFVYSLDYAR 157
Query: 613 TR 618
TR
Sbjct: 158 TR 159
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 58.4 bits (135), Expect = 8e-10
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = +1
Query: 256 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 435
A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N
Sbjct: 31 ATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNC 83
Query: 436 IRYFPTQALNFAFKTSTSSVPRRRYKKTQFWRYFXXXXXXXXXXXXTSLC-FVYPLDFGS 612
+R FP A+ FA + + + +R K + C YPLD
Sbjct: 84 LRAFPYGAVQFA---TFNMLKQRALKNRSHQNLENHERLLFGAIAGAASCATTYPLDIAR 140
Query: 613 TR 618
TR
Sbjct: 141 TR 142
Score = 32.3 bits (70), Expect = 0.058
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +1
Query: 250 YLAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 429
+ + +T P + ++ QV + YK I A I K +G+ F+RG +
Sbjct: 235 FTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSS 291
Query: 430 NVIRYFPTQALNF 468
N+++ P ++ +
Sbjct: 292 NMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 45.2 bits (102), Expect = 8e-06
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +1
Query: 262 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 441
V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 442 YFPTQALNF 468
FP + F
Sbjct: 89 VFPYAGIKF 97
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 271 TAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 450
T V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407
Query: 451 TQALNF 468
+ A+++
Sbjct: 408 SVAISY 413
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 33.5 bits (73), Expect = 0.025
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +1
Query: 274 AVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 444
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 445 FPTQALNFAFKTSTSSVPRRRYKK 516
P +AL FA + S + R+ +K+
Sbjct: 76 APKRALKFASNDTYSKLWRKVFKR 99
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 277 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 444
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRH 171
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.31
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 325 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 468
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.72
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 337 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 435
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 283 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 420
PI+ VK +Q ++A + YK + +I + GLL FW G
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSG 262
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 377 TKASTIPL*RWSAAICLLTCCTWSSSLTRSIGATAV 270
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 361 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 453
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 537 EVTPELR-LLVTPPRNTACTCLEGEVERLGREVPDDVGEVTT 415
E PE + L+VT P N+ + +ER+G P + VTT
Sbjct: 135 ETCPEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTT 176
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 244 WRYLAAVSKTAVAPIE-RVKL-LLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 411
+RYL S ++ PI RV L L ++ H SK +D G+V IP+E G + +
Sbjct: 350 FRYLILFS--SIIPINLRVNLDLAKIVH-SKNTESDPNLPGVVVRSSNIPEELGRIEY 404
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 277 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 420
V P+E V++ LQ+Q K + Y G D +I + GL +G
Sbjct: 130 VGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 37 KKGTHLPSVLP*LRNYSKSPVQKSGVVFRDPPSACAATPTSTYSPSEDHI 186
K G H PS YS + V + + P+A P ++Y+P +H+
Sbjct: 333 KPGNHQPSYTSEQPMYSTASVPQQ---ISNGPTAVNGLPMNSYTPHSNHL 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,535
Number of Sequences: 5004
Number of extensions: 48834
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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