Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20697
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   167   6e-44
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   167   6e-44
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  167 bits (407), Expect = 6e-44
 Identities = 83/122 (68%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
 Frame = +1

Query: 256 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 435
           AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 436 IRYFPTQALNFAFKTSTSSVPRRRY-KKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFGS 612
           IRYFPTQALNFAFK     V      K TQF RYF            TSLCFVYPLDF  
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140

Query: 613 TR 618
           TR
Sbjct: 141 TR 142



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 197 MSNLADPVAFAKDFLAGGI 253
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 283 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 441
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  167 bits (407), Expect = 6e-44
 Identities = 83/122 (68%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
 Frame = +1

Query: 256 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 435
           AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 436 IRYFPTQALNFAFKTSTSSVPRRRY-KKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFGS 612
           IRYFPTQALNFAFK     V      K TQF RYF            TSLCFVYPLDF  
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140

Query: 613 TR 618
           TR
Sbjct: 141 TR 142



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 197 MSNLADPVAFAKDFLAGGI 253
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 283 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 441
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 462 ERLGREVPDDVGEVTTPE 409
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 462 ERLGREVPDDVGEVTTPE 409
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 549  QITSEVTPELRLLVTPPRNTACTCLEGEVERL 454
            Q T+E  PE      PP +T CT L  +  R+
Sbjct: 1074 QHTAEGVPE-----QPPHDTTCTTLTSQTIRI 1100


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 122 VIPHPRVPQLPPRHIHLVKIT 184
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,247
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)