Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20696
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    27   0.071
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    26   0.16 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.1  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   8.1  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 0.071
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +3

Query: 291 HRLFFHIFVHSVYNEHQTKHTKVAWFCTFSSC 386
           H+L   I  + ++  ++  H  + W CT ++C
Sbjct: 234 HQLLLTILTYLIWTIYEMYHLAILWSCTSTNC 265


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 309 IFVHSVYNEHQTKHTKVAWFCTFSSCFKTRWCSICCTSDTIQMRF*IKYRIFV 467
           IF+ +V+     KH+K+A F         R+ S+    DT++ +  IK   F+
Sbjct: 87  IFIVTVWMTGAVKHSKIAHFLNKMIRLDERFQSVGLQIDTVREKRRIKIHFFL 139


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 344 KTYKSCLVLHLLELLQNKVVLYLLHLRHN 430
           KT K+C ++ +  L+   V+LY   L  N
Sbjct: 37  KTDKNCTIVIIFHLILFAVLLYFASLEKN 65


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +3

Query: 321 SVYNEHQTKHTKVAWFCTFSSCFKTRWC 404
           S+ N H   H+ V  +      + T++C
Sbjct: 272 SMLNSHMKSHSNVYRYSCRDCSYATKYC 299


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +3

Query: 321 SVYNEHQTKHTKVAWFCTFSSCFKTRWC 404
           S+ N H   H+ V  +      + T++C
Sbjct: 30  SMLNSHMKSHSNVYRYSCRDCSYATKYC 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,197
Number of Sequences: 336
Number of extensions: 2102
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)