Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20696
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0946 - 29075600-29076229                                         83   2e-16
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344...    29   2.7  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     27   6.3  

>03_05_0946 - 29075600-29076229
          Length = 209

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 35/54 (64%), Positives = 43/54 (79%)
 Frame = +1

Query: 259 LSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGALFAAP 420
           +SHR +PG+D TDCS +FLY LC++SIR N+QKLLGFAP RAA+  GG LF  P
Sbjct: 151 MSHRGVPGNDPTDCSMVFLYFLCSISIRTNLQKLLGFAPPRAAAAAGGGLFPMP 204



 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +2

Query: 122 DLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYPISWIQ 256
           +LSL K+KS   +      +  + NS+F+GR VAKLPF P+  +Q
Sbjct: 105 ELSLSKLKSGAVVAAVLFVVFGLLNSLFEGRAVAKLPFAPVPLVQ 149


>01_01_0467 -
           3446243-3446254,3446331-3446420,3446544-3446816,
           3446898-3447066,3447579-3447646,3447890-3448074,
           3448683-3448806
          Length = 306

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 232 ILSYFMDSGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLL 363
           I+  F+D  L+++N+   DYT     F+ + C +S+  N    L
Sbjct: 158 IVGPFLDGFLTNQNVFAFDYTSQVVFFIVLSCLISVSVNFSTFL 201


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 240 LFHGFRSEP*EFTW**LHRLFFHIFVHSVYNEHQTKHTK--VAWFCTFSSC 386
           LFH  R +P +  W  L RL+ H+ ++   +     H K   +W     +C
Sbjct: 648 LFHWLREKPADEAWDELARLWVHLVIYLAPSNDVQGHAKALASWGADLITC 698


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,056
Number of Sequences: 37544
Number of extensions: 189163
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)