Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20696
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43361| Best HMM Match : DUF841 (HMM E-Value=9.7e-07)                39   0.003
SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  29   1.6  
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_43361| Best HMM Match : DUF841 (HMM E-Value=9.7e-07)
          Length = 114

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +1

Query: 337 IRQNIQKLLGFAPSRAASKQGGALFAAPQ 423
           +  N+QK LGFAPSRAASK GG L   PQ
Sbjct: 84  LSMNVQKALGFAPSRAASKVGG-LLTPPQ 111


>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 577

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 346 NIQKLLGFAPSRAASKQGGALFAAPQ 423
           +I++L G  PSRAAS++   LFA P+
Sbjct: 361 DIKELRGLKPSRAASRKEQPLFACPE 386


>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 294 RLFFHIFVHSVYNEHQTKHTKVAWF 368
           +L  H+FVH ++N+H TK   + ++
Sbjct: 80  KLNTHVFVHRLHNKHATKPKPIKYW 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,407
Number of Sequences: 59808
Number of extensions: 236347
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)