Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20696
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 375 FSSCFKTRWCSICCTSDTI 431
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 375 FSSCFKTRWCSICCTSDTI 431
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 375 FSSCFKTRWCSICCTSDTI 431
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -1

Query: 397 LVLKQLEKVQNQATFVC 347
           L+++ +E++ +QAT+ C
Sbjct: 545 LIIENVERMSDQATYTC 561


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 274 LPGDDYTDCSFIFLYIL 324
           LPG     C F F+ IL
Sbjct: 370 LPGSSIWSCLFFFMLIL 386


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 274 LPGDDYTDCSFIFLYIL 324
           LPG     C F F+ IL
Sbjct: 423 LPGSSIWSCLFFFMLIL 439


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 217 YSAIKYTIKHAEQGSKSKTNCK 152
           YS+++ T+K+ E GS    N K
Sbjct: 301 YSSLENTLKYYEVGSNVPFNFK 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,853
Number of Sequences: 438
Number of extensions: 2223
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)