Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20696
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06660.1 68418.m00752 expressed protein contains PF05809: Euk...    73   1e-13
At3g12030.1 68416.m01492 expressed protein similar to membrane p...    73   1e-13
At4g09810.1 68417.m01610 transporter-related low similarity to U...    30   1.00 
At1g34020.1 68414.m04218 transporter-related low similarity to U...    29   2.3  
At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing ...    27   5.3  
At1g14870.1 68414.m01778 expressed protein similar to PGPS/D12 [...    27   9.3  

>At5g06660.1 68418.m00752 expressed protein contains PF05809:
           Eukaryotic protein of unknown function (DUF841)
          Length = 196

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 33/54 (61%), Positives = 40/54 (74%)
 Frame = +1

Query: 259 LSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGALFAAP 420
           +SHR L GDD TDCS  FLY+LC++SIR N+QK LGF+P R A+  GG LF  P
Sbjct: 139 MSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGG-LFPMP 191



 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +2

Query: 122 DLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYPISWIQ 256
           DLSL K KS   +      +  + NS+F+G+VVAKLPF+PI+ ++
Sbjct: 93  DLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVR 137


>At3g12030.1 68416.m01492 expressed protein similar to membrane
           protein GB:BAA86974 GI:6467175 from [Homo sapiens]
          Length = 196

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 33/54 (61%), Positives = 40/54 (74%)
 Frame = +1

Query: 259 LSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGALFAAP 420
           +SHR L GDD TDCS  FLY+LC++SIR N+QK LGF+P R A+  GG LF  P
Sbjct: 139 MSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGG-LFPMP 191



 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +2

Query: 122 DLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYPISWIQ 256
           DLSL K KS   +      +  + NS+F+G+VVAKLPF+PI+ ++
Sbjct: 93  DLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVK 137


>At4g09810.1 68417.m01610 transporter-related low similarity to
           UDP-sugar transporter [Drosophila melanogaster]
           GI:14971008,  UDP-glucuronic acid transporter [Homo
           sapiens] GI:11463949
          Length = 335

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 232 ILSYFMDSGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQ 396
           I+  F+D  L+ + +   DY   S +F+ + CT++I  N+ + +      A S Q
Sbjct: 202 IVGPFLDYWLTDKRVDMYDYNSVSVMFITLSCTIAIGTNLSQFICIGRFTAVSFQ 256


>At1g34020.1 68414.m04218 transporter-related low similarity to
           UDP-sugar transporter [Drosophila melanogaster]
           GI:14971008, UDP-glucuronic acid transporter [Homo
           sapiens] GI:11463949
          Length = 335

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 232 ILSYFMDSGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQ 396
           ++  F+D  L+ + +   DY   S +F+ + CT++I  N+ + +      A S Q
Sbjct: 202 VVGPFLDYWLTEKRVDMYDYNLVSVLFITLSCTIAIGTNLSQFICIGRFTAVSFQ 256


>At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PATCHX:G2393775
          Length = 249

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 301 NNLCNHHQVNSYGSDLNP*NRIKWKFSHYSAIKYTIKHAEQGSKSK 164
           +NL  + QV  YG  +NP ++ KW  S  + +     +      S+
Sbjct: 173 DNLLVNQQVGGYGYHMNPVDQFKWNQSFNNTMNMNYNNDSTSGSSR 218


>At1g14870.1 68414.m01778 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 152

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
 Frame = +1

Query: 271 NLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPS-------RAASKQGGALFAAPQTQ 429
           N+ GDD TDC   F   LC+++ +    K  G+  S            QGG    AP  Q
Sbjct: 88  NIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQQNQGGVAMGAPVFQ 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,986,166
Number of Sequences: 28952
Number of extensions: 165437
Number of successful extensions: 373
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)