Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20695
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   120   1e-28
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   120   1e-28
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   118   1e-27
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.78 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.5  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   7.3  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    25   7.3  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   7.3  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  120 bits (290), Expect = 1e-28
 Identities = 53/75 (70%), Positives = 65/75 (86%)
 Frame = +1

Query: 25  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 204
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 205 NPARGPFHFRAPSKI 249
           NP+RG FHFRAPS+I
Sbjct: 66  NPSRGAFHFRAPSRI 80



 Score =  100 bits (240), Expect = 2e-22
 Identities = 45/83 (54%), Positives = 54/83 (65%)
 Frame = +3

Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
           K VRGM+PHKT RG+ AL  L+  +G PPPFD               LKPGR YC VGRL
Sbjct: 83  KAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRL 142

Query: 435 SHEIGWKYRDVVRKLEDKRKGKA 503
           S E+GWKY D+V KLE++RK K+
Sbjct: 143 SSEVGWKYSDIVSKLEERRKVKS 165


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  120 bits (290), Expect = 1e-28
 Identities = 53/75 (70%), Positives = 65/75 (86%)
 Frame = +1

Query: 25  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 204
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 205 NPARGPFHFRAPSKI 249
           NP+RG FHFRAPS+I
Sbjct: 66  NPSRGAFHFRAPSRI 80



 Score =  101 bits (241), Expect = 1e-22
 Identities = 45/83 (54%), Positives = 54/83 (65%)
 Frame = +3

Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
           K VRGM+PHKT RG+ AL  L+  +G PPPFD               LKPGR YC VGRL
Sbjct: 83  KAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRL 142

Query: 435 SHEIGWKYRDVVRKLEDKRKGKA 503
           S E+GWKY D+V KLE++RK K+
Sbjct: 143 SSEVGWKYNDIVAKLEERRKVKS 165


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  118 bits (283), Expect = 1e-27
 Identities = 50/75 (66%), Positives = 64/75 (85%)
 Frame = +1

Query: 25  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 204
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 205 NPARGPFHFRAPSKI 249
           NP+RG FHFRAPS+I
Sbjct: 66  NPSRGAFHFRAPSRI 80



 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 42/83 (50%), Positives = 54/83 (65%)
 Frame = +3

Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
           K VRGM+PHKT RG  AL+ L+  +G PPPFD               LKP R YC +GRL
Sbjct: 83  KAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRL 142

Query: 435 SHEIGWKYRDVVRKLEDKRKGKA 503
           S E+GWKY+++V KLE++RK K+
Sbjct: 143 SSEVGWKYKNIVSKLEERRKIKS 165


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 52  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 156
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 337 GHPSYVRSLLRAFLPRSVLCGIMP 266
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 601 LDDGSEWCCRLRHLXTSILGDPLKFLFIGNSLTAL 497
           L D  E   R+RH   S++G+P+ + +I   ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 135 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKAR 10
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KAR 166


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -3

Query: 236 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLAMTA 72
           AL+  G      ++L+R+ND +    +KK+ + LI  ++  T     R  L  T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,363
Number of Sequences: 5004
Number of extensions: 55493
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)