Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20695
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 102 2e-22
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 101 4e-22
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 79 2e-15
11_04_0056 + 12942802-12942920,12943022-12943115 58 5e-09
04_03_0232 - 13049649-13052807 31 0.81
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 5.7
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 5.7
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 7.5
04_03_0148 + 11869929-11869968,11870000-11870421 27 9.9
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 102 bits (245), Expect = 2e-22
Identities = 46/86 (53%), Positives = 61/86 (70%)
Frame = +1
Query: 1 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 180
V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K +
Sbjct: 2 VSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLR 61
Query: 181 FLRKRCNVNPARGPFHFRAPSKIL*R 258
FLRKR N P+ GP HFRAPS+I R
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSRIFWR 87
Score = 97.9 bits (233), Expect = 6e-21
Identities = 42/83 (50%), Positives = 54/83 (65%)
Frame = +3
Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
+TVRGMIPHKT RG+ AL L+ +DG PPP+D L+PG YC +G+L
Sbjct: 87 RTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQL 146
Query: 435 SHEIGWKYRDVVRKLEDKRKGKA 503
S E+GW Y D +R+LE+KRK KA
Sbjct: 147 SKEVGWNYHDTIRELEEKRKEKA 169
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 101 bits (243), Expect = 4e-22
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = +1
Query: 1 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 180
V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K +
Sbjct: 2 VSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLR 61
Query: 181 FLRKRCNVNPARGPFHFRAPSKIL*R 258
FLRKR N P+ GP HFR+P+KIL R
Sbjct: 62 FLRKRMNTKPSHGPIHFRSPAKILWR 87
Score = 99 bits (238), Expect = 2e-21
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +3
Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D L+PG YC +G+L
Sbjct: 87 RTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQL 146
Query: 435 SHEIGWKYRDVVRKLEDKRKGKA 503
S E+GW Y D +R+LE+KRK KA
Sbjct: 147 SKEVGWNYYDTIRELEEKRKEKA 169
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/73 (46%), Positives = 45/73 (61%)
Frame = +3
Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG YC +G+L
Sbjct: 21 RTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQL 80
Query: 435 SHEIGWKYRDVVR 473
S E+GW Y D +R
Sbjct: 81 SKEVGWNYYDTIR 93
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 199 NVNPARGPFHFRAPSKIL*R 258
N P+ GP HFR+P+KIL R
Sbjct: 2 NTKPSHGPIHFRSPAKILWR 21
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 291 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 458
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 501 PCPSSCLQAYEQHHGISIQFHGTVCLH 421
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 553 W*XGVEGDNTIHYHHPILWIQLGLRNYNKNKPFG 654
W G++ D + HHP L++ R Y K P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 420 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKELPM-KRNLRGSPRML 554
H G E G +VVR L D +GKAV+ L + R LR P L
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQL 210
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 70 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 180
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 38 SMAVVICWAVWRQSSPRSF 94
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,726,739
Number of Sequences: 37544
Number of extensions: 393139
Number of successful extensions: 1024
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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