Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20695
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             31   0.62 
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              29   4.4  
SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)                 28   5.8  
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)           28   7.7  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.7  
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 270 MIPHKTERGKNALRRLRTYDGCPPPFD 350
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 38  SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSISLA 148
           SM+V +C ++W  + P  F    +L+W+  + S+S++
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 215 RAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTL 105
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


>SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)
          Length = 624

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +3

Query: 402 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSP 545
           PG+  C VG+L +   W +  + R L  +    A    P  +    +P
Sbjct: 535 PGKQLCLVGQLGYRGRWSFSVIDRPLHTRELAAAFTRTPAAKQRANNP 582


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
 Frame = +1

Query: 34  VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 168
           +IDGR  + GRLA  I ++L              G+ VVV+  + I +SG  + NKL
Sbjct: 20  LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKL 76


>SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 297 CHALFCVGSCLLQSS*NLRWSSKMERSTS 211
           CH+++  GS  +Q   N++W+  +E + S
Sbjct: 141 CHSMYIFGSMGMQKKANIKWNKFLEETRS 169


>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
          Length = 676

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 426 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 319
           +H S + +V  ++H+E +A  H   Y R +  H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 276  GSCLLQSS*NLRWSSKMERSTSRIHVAPL 190
            G  L++ +  L W++++ RST  ++++PL
Sbjct: 1712 GGSLMEQNPALEWNTQLWRSTQEVYISPL 1740


>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 276 GSCLLQSS*NLRWSSKMERSTSRIHVAPL 190
           G  L++ +  L W++++ RST  ++++PL
Sbjct: 384 GGSLMEQNPALEWNTQLWRSTQEVYISPL 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,327,947
Number of Sequences: 59808
Number of extensions: 444525
Number of successful extensions: 1759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1757
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)