Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20695
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   128   3e-30
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   128   3e-30
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.9  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   8.9  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/82 (70%), Positives = 71/82 (86%)
 Frame = +1

Query: 13  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 192
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 193 RCNVNPARGPFHFRAPSKIL*R 258
           RCN+NPARG FH+RAP KI  R
Sbjct: 62  RCNINPARGAFHYRAPGKIFWR 83



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 43/93 (46%), Positives = 56/93 (60%)
 Frame = +3

Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
           +TVRGM+PHKT RG  AL+ LR Y+G P  +              F L+P R +C VGRL
Sbjct: 83  RTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRL 141

Query: 435 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 533
           SHE+GW+++DVV KLE KRK K       K+ +
Sbjct: 142 SHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKM 174


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/82 (70%), Positives = 71/82 (86%)
 Frame = +1

Query: 13  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 192
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 193 RCNVNPARGPFHFRAPSKIL*R 258
           RCN+NPARG FH+RAP KI  R
Sbjct: 62  RCNINPARGAFHYRAPGKIFWR 83



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 43/93 (46%), Positives = 56/93 (60%)
 Frame = +3

Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
           +TVRGM+PHKT RG  AL+ LR Y+G P  +              F L+P R +C VGRL
Sbjct: 83  RTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRL 141

Query: 435 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 533
           SHE+GW+++DVV KLE KRK K       K+ +
Sbjct: 142 SHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKM 174


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 501 PCPSSCLQAYEQHHGISIQFHGTVCLHD 418
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 498 CPSSCLQAYEQHHGISIQFHGTVCLHDSNY 409
           C S  L  +E HHGI +   G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -2

Query: 465 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 298
           HH      H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -2

Query: 477 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 304
           A+  HHG     HG    H S  ++G   +  H       H  G+    G HH +  S  
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594

Query: 303 HSCHA 289
           H  HA
Sbjct: 595 HGHHA 599


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 476 LTNNITVFPSNFMGQSAYMTVITARFQTE 390
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,291
Number of Sequences: 27780
Number of extensions: 324295
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)