Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20695
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 107 8e-24
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 105 3e-23
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 105 3e-23
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 104 5e-23
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 30 1.6
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 29 3.6
At5g65687.1 68418.m08267 transporter-related low similarity to s... 28 4.8
At5g06310.1 68418.m00707 expressed protein similar to unknown pr... 28 4.8
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 6.3
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 6.3
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 27 8.3
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 107 bits (256), Expect = 8e-24
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +1
Query: 1 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 180
V +G +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG R K+K M
Sbjct: 2 VSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMR 61
Query: 181 FLRKRCNVNPARGPFHFRAPSKIL*R 258
FLRKR N P+ GP HFRAPSKI R
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSKIFWR 87
Score = 89.0 bits (211), Expect = 2e-18
Identities = 41/93 (44%), Positives = 55/93 (59%)
Frame = +3
Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
+TVRGMIPHKT+RG AL RL+ Y+G P P+D L+ G YC +GRL
Sbjct: 87 RTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRL 146
Query: 435 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 533
S E+GW + D +++LE KRK +A K+ L
Sbjct: 147 SSEVGWNHYDTIKELETKRKERAHVVYERKKQL 179
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 105 bits (252), Expect = 3e-23
Identities = 49/86 (56%), Positives = 60/86 (69%)
Frame = +1
Query: 1 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 180
V +G +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG R K+K M
Sbjct: 2 VSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMR 61
Query: 181 FLRKRCNVNPARGPFHFRAPSKIL*R 258
FLRKR N P+ GP HFRAPSKI R
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSKIFWR 87
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/93 (43%), Positives = 56/93 (60%)
Frame = +3
Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
+TVRGMIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRL
Sbjct: 87 RTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRL 146
Query: 435 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 533
S E+GW + D +++LE KRK ++ K+ L
Sbjct: 147 SSEVGWNHYDTIKELEVKRKERSQALYERKKQL 179
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 105 bits (252), Expect = 3e-23
Identities = 49/86 (56%), Positives = 60/86 (69%)
Frame = +1
Query: 1 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 180
V +G K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG R K+K M
Sbjct: 2 VSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMR 61
Query: 181 FLRKRCNVNPARGPFHFRAPSKIL*R 258
FLRKR N P+ GP HFRAPSKI R
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSKIFWR 87
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/93 (44%), Positives = 57/93 (61%)
Frame = +3
Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
+TVRGMIPHKT+RG NAL RL+ ++G P P+D L+ G YC +GRL
Sbjct: 87 RTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRL 146
Query: 435 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 533
S E+GW + D +++LE+KRK +A K+ L
Sbjct: 147 SSEVGWNHYDTIKELENKRKERAQAVYERKKQL 179
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 104 bits (250), Expect = 5e-23
Identities = 50/86 (58%), Positives = 60/86 (69%)
Frame = +1
Query: 1 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 180
V +G K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG R K+K M
Sbjct: 2 VSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMR 61
Query: 181 FLRKRCNVNPARGPFHFRAPSKIL*R 258
FLRKR N P+ GP HFRAPSKI R
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSKIFWR 87
Score = 89.8 bits (213), Expect = 1e-18
Identities = 40/93 (43%), Positives = 56/93 (60%)
Frame = +3
Query: 255 KTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 434
+TVRGMIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRL
Sbjct: 87 RTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRL 146
Query: 435 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 533
S E+GW + D +++LE KRK ++ K+ L
Sbjct: 147 SSEVGWNHYDTIKELETKRKERSQVMYERKKQL 179
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 7 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 168
M G++N IDG H+ G A++ + K+ V++ + I++SG R L
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGL 339
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 290 LCFVWDHASYSLHRILDGAL 231
LC+++ H +Y LH +L GA+
Sbjct: 349 LCYIFHHMAYELHGVLTGAV 368
>At5g65687.1 68418.m08267 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003976, GI:12003972, GI:12003974,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 492
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 308 KSILATLCFVWDHASYSLHRILDGALKWKGPRAGFTLHLLRRNDI 174
K++ + F+ + Y + + GA + GP+AGF ++ ++ D+
Sbjct: 272 KALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKNADM 316
>At5g06310.1 68418.m00707 expressed protein similar to unknown
protein (gb|AAD29059.1)
Length = 463
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 631 NFLVLIVSIGLDDGSEWCCRLRHLXTSILGDPLKFLFIGNSLTALP 494
N + +IV +G +GS+ C L+ + G L F+ ++ LP
Sbjct: 26 NLIGVIVELGFSNGSDCSCTLKIVDPWYSGSGLPVKFVARTIRDLP 71
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 7 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 168
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 7 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 168
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -3
Query: 254 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEI 138
H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 662 HSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,071
Number of Sequences: 28952
Number of extensions: 308189
Number of successful extensions: 866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -