Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20693
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    33   0.15 
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    33   0.15 
At1g32190.1 68414.m03959 expressed protein                             33   0.26 
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    31   0.61 
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    28   5.7  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 609 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKT 713
           P  KALKA + V  G+  K+  +KIR  V F RPKT
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKT 49


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 609 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKT 713
           P  KALKA + V  G+   K+ +KIR  V F RPKT
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKT 49


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 148 TGTCPESSCACPEISCACPETSCACPESSCLC 243
           +G C   SC+CP+  C  P  SC C    C C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGCGCGDCGC 328



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 154 TCPESSCACPEISCACPETSCACPESSC 237
           +CP+  C  P  SC C    C C + SC
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSC 333



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +1

Query: 166 SSCACPEISCACPETSCACPESSC----LCPQT 252
           SSC CP   C+       CP+ SC     CP T
Sbjct: 350 SSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDT 382


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 133 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 237
           C     GTC E  C CP+ SC      C C +S C
Sbjct: 665 CPCLLNGTCCEKYCGCPK-SCKNRFRGCHCAKSQC 698


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 133 CVSQNTGTCPESSCACPEISCACPETSCACPESSCLC 243
           C+ +  G C    C   E +  C + S  CP+S  +C
Sbjct: 377 CLYEYNGKCYSWGCCPYESATCCDDGSSCCPQSYPVC 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,816,976
Number of Sequences: 28952
Number of extensions: 106963
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)