Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20692
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   100   2e-22
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  100 bits (240), Expect = 2e-22
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +3

Query: 54  KGHSCIIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 215
           K  +  IK+EFDKK++PTWHCIVGRNFGS+VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 32  KDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGTVAFLLFKSG 85



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 1   QQDAVDCATQALEKFNIEKDIAASSRKNLTR 93
           QQ+A+  A QA+EKF IEKDIAA  ++   +
Sbjct: 14  QQEAIHAAVQAMEKFTIEKDIAAFIKREFDK 44


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 54  KGHSCIIKKEFDKKYNPTWHCIVGRNFGSY 143
           KG  C + K        TW C  G+N+G +
Sbjct: 205 KGRECYMLKRAQILVAETWACFQGQNYGRF 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,549
Number of Sequences: 5004
Number of extensions: 52839
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)