Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20692
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0324 - 20946774-20946935,20947301-20947780                       70   2e-12
02_04_0361 - 22359278-22359439,22362291-22362728                       69   5e-12
01_06_0783 + 31975261-31975398,31975583-31975726                       60   2e-09
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           48   8e-06
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     45   6e-05
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494...    31   1.3  

>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 26/47 (55%), Positives = 37/47 (78%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 212
           +KKEFDK Y PTWHCIVG ++GS+VTH    F+YF + ++ ++LFK+
Sbjct: 158 VKKEFDKVYGPTWHCIVGTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 212
           +KKEFD  Y P WHCIVG  FGSYVTH    F+YF + +V +LLF++
Sbjct: 144 LKKEFDATYGPAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 209
           IKKEFD  + P W C+VG +FG Y TH    FIYF LG +  L+FK
Sbjct: 44  IKKEFDMIHGPGWQCVVGASFGCYFTHSKGSFIYFKLGALRFLVFK 89


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNF 134
           IKKEFDK + PTWHCIVGRNF
Sbjct: 83  IKKEFDKNHGPTWHCIVGRNF 103


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +3

Query: 78  KEFDKKYNPTWHCIVGRNFGS 140
           KEFDK + PTWHCIVG NFG+
Sbjct: 96  KEFDKNHGPTWHCIVGHNFGT 116


>11_01_0618 -
           4941906-4942118,4942231-4942343,4942534-4942651,
           4942762-4942881,4942964-4943101,4943392-4943517,
           4943659-4943847,4943951-4944238,4944344-4944374,
           4945014-4945216
          Length = 512

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 134 KITTHDAMPGRIVFLVKFFLDDAAMSFSMLNFSS 33
           K+ T D  P    +L+KFF   AA +   LNFS+
Sbjct: 255 KVVTFDKNPDNHPYLLKFFQSSAAKAMLFLNFST 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,065
Number of Sequences: 37544
Number of extensions: 316493
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)