Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20692
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               111   6e-25
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   4e-07
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    31   0.99 
SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)                    29   4.0  
SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  111 bits (267), Expect = 6e-25
 Identities = 48/54 (88%), Positives = 50/54 (92%)
 Frame = +3

Query: 54  KGHSCIIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 215
           K  +  IKKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 36  KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +1

Query: 1   QQDAVDCATQALEKFNIEKDIAASSRKNLTR 93
           Q DA++CATQALEKFNIEKDIAA  +K   +
Sbjct: 18  QTDAIECATQALEKFNIEKDIAAFIKKEFDK 48


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +3

Query: 69  IIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILL 203
           +IK+  DKK+  +WH +VG  FG  +THE R+ +Y + G+   +L
Sbjct: 61  MIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGKYTTIL 105


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 350 CHTLAASYLWECTTARASHENLQRLSI**YCVAANKKIEVMLNGLTALKEQ 198
           CH   + Y  +C   R S E+   L +  YC    KK+    +  TALK +
Sbjct: 184 CHECHSHYHQKCHEPRVSDEDANDLRLVWYCTLCIKKMREATSSTTALKNR 234


>SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)
          Length = 354

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFY 179
           +K+E D    PT+  + G  +G     +T+HFIY Y
Sbjct: 43  VKREGDPLVRPTFP-VAGFTYGIQYAAKTKHFIYVY 77


>SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 284 ADSHARLGLWYIPIGS*QPECGRRRQG*CWCERFSSECESGC 409
           AD +  +GLW+  +G         +   C  E+F  EC+  C
Sbjct: 308 ADVYYNIGLWFKSLGDNGQAMVNFKNALCIYEKFGEECKQAC 349


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 54  KGHSCIIKKEFDKKYNPTW-HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 215
           KG+ C  K  F   +N TW + +V ++FG  V  + +   +  +  + + +F SG
Sbjct: 796 KGYECFCKSGFLDVFNNTWFYSLVCKSFGQRVNQQFQIDFFSVVRLIFLEVFFSG 850


>SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 142 YEPKLRPTMQCQVGLYFLSNSFLMMQLCPFQC*I--SRALELHSQQ 11
           Y+ +L    +C+  L FLS S+L  +LC  +  I  SR  EL   +
Sbjct: 212 YQQRLEIAEKCRAVLVFLSKSYLQSRLCQHEAKILLSRNEELEDSE 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,495,625
Number of Sequences: 59808
Number of extensions: 387716
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)