Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20692
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   111   7e-25
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    66   2e-11
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    54   8e-08
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    50   1e-06
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    50   1e-06
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   4.6  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  111 bits (266), Expect = 7e-25
 Identities = 48/54 (88%), Positives = 50/54 (92%)
 Frame = +3

Query: 54  KGHSCIIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 215
           K  +  IKKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 36  KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 1   QQDAVDCATQALEKFNIEKDIAASSRKNLTR 93
           QQDA+DCATQALEK+NIEKDIAA  +K   +
Sbjct: 18  QQDAIDCATQALEKYNIEKDIAAYIKKEFDK 48


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 212
           +K  FD++Y P WHCI G++FGS+VT E   FIYF +G +A +LFK+
Sbjct: 94  LKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = +3

Query: 54  KGHSCIIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 215
           K  +  +K+E DKK+  TWH I G+ FGS V++E  HFI     +V ++++K G
Sbjct: 36  KDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 19/46 (41%), Positives = 34/46 (73%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 209
           +K++FD KY   W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 86  MKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 19/46 (41%), Positives = 34/46 (73%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 209
           +K++FD KY   W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 68  MKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 130 LRPTMQCQVGLYFLSN 83
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 130 LRPTMQCQVGLYFLSN 83
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,038
Number of Sequences: 27780
Number of extensions: 298947
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)