Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20692
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15930.1 68417.m02419 dynein light chain, putative similar to...    96   2e-20
At5g20110.1 68418.m02394 dynein light chain, putative similar to...    72   4e-13
At1g23220.1 68414.m02904 dynein light chain type 1 family protei...    72   4e-13
At3g16120.1 68416.m02036 dynein light chain, putative similar to...    63   2e-10
At4g27360.1 68417.m03927 dynein light chain, putative similar to...    63   2e-10
At1g52250.1 68414.m05895 dynein light chain type 1 family protei...    60   2e-09
At5g35370.1 68418.m04204 lectin protein kinase family protein co...    29   3.3  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    28   5.7  
At3g60750.1 68416.m06796 transketolase, putative strong similari...    27   10.0 
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    27   10.0 

>At4g15930.1 68417.m02419 dynein light chain, putative similar to
           dynein light chain 2 [Mus musculus] GI:15545995;
           contains Pfam profile PF01221: Dynein light chain type 1
          Length = 103

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 40/48 (83%), Positives = 43/48 (89%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 215
           IKKEFDKK+  TWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 56  IKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 103



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 1   QQDAVDCATQALEKFNIEKDIAASSRKNLTR 93
           Q++A++ A  A EK+++EKDIA + +K   +
Sbjct: 32  QKEAIEIAISAFEKYSVEKDIAENIKKEFDK 62


>At5g20110.1 68418.m02394 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 209

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 29/47 (61%), Positives = 37/47 (78%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 212
           +KKEFDK Y P WHCIVG +FGS+VTH T  FIYF + ++ +LLFK+
Sbjct: 155 LKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201


>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 129

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 212
           +KK+FD  Y P WHCIVG +FGSYVTH T  F+YF + +V +LLFK+
Sbjct: 75  LKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121


>At3g16120.1 68416.m02036 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 93

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 209
           IKKEFD++Y   W C+VG NFG + TH    FIYF+LG +  L+FK
Sbjct: 44  IKKEFDERYGSGWQCVVGTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89


>At4g27360.1 68417.m03927 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 103

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 209
           IKKEFD+ Y   W CIVG +FGS+VTH +  FI+F +G + ILLFK
Sbjct: 44  IKKEFDRSYGSGWQCIVGTHFGSFVTHCSGCFIHFSVGSLTILLFK 89


>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 94

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 25/50 (50%), Positives = 31/50 (62%)
 Frame = +3

Query: 72  IKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG*T 221
           IKKEFD++Y   W C+VG NFG + TH    FIYF L  +  L+FK   T
Sbjct: 44  IKKEFDERYGSGWQCVVGSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93


>At5g35370.1 68418.m04204 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 870

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 214 PLLKSSIATCPR*K*MKWRVSCVTYEPKLRPTMQCQVGLY 95
           P L+  + +    K ++  + CV  EP LRPTM   VG++
Sbjct: 762 PRLEGRVTSQEAEKLVRIALCCVHEEPALRPTMAAVVGMF 801


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 389 SECESGCTVFTYTV-YLIRNS-QCWTLTASYLF 481
           SEC +  T + +T  Y  RNS +CW +T +Y++
Sbjct: 490 SECSATQTEYKFTSEYGKRNSSECWAMTTTYIY 522


>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 563 EVNVYKSKVP*VIANTVQNTPHAPGTK*RG 474
           ++ V K K P ++A + Q  PH PGT   G
Sbjct: 582 KIAVTKRKTPSILALSRQKLPHLPGTSIEG 611


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 417 KTVHPLSH-SLENRSHQH*PCLLLPHSGC*LPMGMYHS 307
           KTV+PL   ++E  S+ H  C    HSGC L    Y S
Sbjct: 111 KTVYPLEKVTMEGESY-HKTCFRCTHSGCPLTHSSYAS 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,090
Number of Sequences: 28952
Number of extensions: 261878
Number of successful extensions: 500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)