Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20691
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    97   2e-21
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    94   8e-21
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.45 
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   1.0  
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    27   1.4  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   3.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.6  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   5.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   5.6  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   5.6  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   9.7  
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom...    24   9.7  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 41/62 (66%), Positives = 51/62 (82%)
 Frame = +2

Query: 65  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 244
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 245 NG 250
           NG
Sbjct: 66  NG 67



 Score = 68.9 bits (161), Expect = 3e-13
 Identities = 32/63 (50%), Positives = 46/63 (73%)
 Frame = +1

Query: 241 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 420
           P  +   LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++R
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124

Query: 421 SQE 429
           SQE
Sbjct: 125 SQE 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 94.3 bits (224), Expect = 8e-21
 Identities = 41/62 (66%), Positives = 50/62 (80%)
 Frame = +2

Query: 65  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 244
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 245 NG 250
           NG
Sbjct: 66  NG 67



 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 32/63 (50%), Positives = 46/63 (73%)
 Frame = +1

Query: 241 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 420
           P  +   LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++R
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124

Query: 421 SQE 429
           SQE
Sbjct: 125 SQE 127


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 432 ILLGAEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 310
           +L  ++   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 139 TPIPLKFV--IAIRLMPDKSLRP 77
           TP+P+KFV  IA+  MP  +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 13  VSKRNIQDGYKTCLQADNRQKEDEEIYQASIG 108
           +SKR+I  G +   Q D  ++E  EIYQ S+G
Sbjct: 66  ISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 247 WIPKVLVHNVKEL-EILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 423
           W+ +VL  +  E+ EI  +Q     A +  G +SKK  ++ E  ++LSI  T ++     
Sbjct: 579 WMARVLGDDKAEISEISKVQTSIKSATMIKGSTSKKVAVVSENNRRLSIFDTRSSEFSEK 638

Query: 424 QE 429
           +E
Sbjct: 639 EE 640


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 349 SSKRHHERSLRSTSCFASSRFPAL*H 272
           +S   HER +R    + S+RFP L H
Sbjct: 446 TSNTMHERHIRLLVSYLSNRFPILLH 471


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 25  NIQDGYKTCLQADNRQKEDEEIYQASIGS 111
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 89  FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
           F  H  D YD+L  NW++   ++    +RFK      NI  G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 25  NIQDGYKTCLQADNRQKEDEEIYQASIGS 111
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 56  RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 205
           R T VK+R K  I+  S+    +     KP G   R R+  K  Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 456 LIIQLYLFILLGAEASGRI 400
           LIIQL+ F L+G E  G++
Sbjct: 921 LIIQLFTFYLIGFEEEGKM 939


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 316 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 402
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 187 LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDC--RPVN 50
           L + P    ++ T+RF P+PL   ++ ++    SL P +  C   P+N
Sbjct: 569 LKVPPLVPLLIGTTRFFPVPL---VSSQIAIISSLGPSYSGCFQGPIN 613


>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 238

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 91 KSLRPLFDDCRPVNRSYSHLVC 26
          +S++ + DDC P N    +L C
Sbjct: 17 ESVKSVLDDCTPPNVQLEYLTC 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,019
Number of Sequences: 5004
Number of extensions: 35705
Number of successful extensions: 109
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)