Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20691
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 105 2e-23
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 101 4e-22
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 101 4e-22
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 95 3e-20
08_02_1238 + 25486263-25487574,25488210-25489117 27 7.3
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 27 7.3
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 27 7.3
03_05_0796 + 27787401-27788831 27 7.3
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 27 7.3
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 105 bits (252), Expect = 2e-23
Identities = 49/77 (63%), Positives = 60/77 (77%)
Frame = +2
Query: 23 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 202
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 203 IGYGSNKKTRHMLPNGF 253
IGYGS+KKTRH LPN F
Sbjct: 378 IGYGSDKKTRHYLPNKF 394
Score = 35.1 bits (77), Expect = 0.027
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNR 309
Y P K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 101 bits (241), Expect = 4e-22
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 215 SNKKTRHMLPNGF 253
S+KKTRH LPN F
Sbjct: 60 SDKKTRHYLPNKF 72
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/55 (65%), Positives = 41/55 (74%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 399
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 101 bits (241), Expect = 4e-22
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 215 SNKKTRHMLPNGF 253
S+KKTRH LPN F
Sbjct: 60 SDKKTRHYLPNKF 72
Score = 94.7 bits (225), Expect = 3e-20
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 415 LRSQENE 435
LRSQE+E
Sbjct: 127 LRSQEDE 133
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 94.7 bits (225), Expect = 3e-20
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 415 LRSQENE 435
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 74.9 bits (176), Expect = 3e-14
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +2
Query: 131 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGF 253
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKF 139
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 127
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 375 GSFHDQLPLL----RRDTMSDLCAVLPVLHHQ 292
G+ H+Q P L RRD ++D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Frame = +1
Query: 193 DAQHWLRFQ--QEDPSYAPKWIPKVLVHNV--KELEILMMQNRKYCAEIAHGVSSKKRKL 360
D L F+ E +A KW+P HN+ + E Q Y + K+R+
Sbjct: 392 DGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRA 451
Query: 361 IVERAQQLSIRVTNAAARLRSQENE 435
+ ++ +R+ A+ + E
Sbjct: 452 MKREYEEFKVRINALVAKAQKVPEE 476
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 321 RDRSWCLFEEAEADRGKSPAAQHQSDECGRSPP 419
+ R++ LF+E D KSP AQ S SPP
Sbjct: 472 KKRAFRLFQEDSLDIRKSPEAQMNSPSSVLSPP 504
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 348 EAEADRGKSPAAQHQSDECGR 410
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 443 YIYSFSWERRRAAAFVTLMLSCWALSTISFRFFEE 339
Y+++ ER A + +TLM++C++L + F +
Sbjct: 177 YLFNSQLERNIALSIITLMITCFSLVVVGGFLFHK 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,375,140
Number of Sequences: 37544
Number of extensions: 248169
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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