Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20691
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   3e-29
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   4.3  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   4.3  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  27   5.6  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)                27   7.5  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   7.5  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  124 bits (300), Expect = 3e-29
 Identities = 53/71 (74%), Positives = 63/71 (88%)
 Frame = +2

Query: 41  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 220
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 221 KKTRHMLPNGF 253
           KKTR ++P+GF
Sbjct: 62  KKTRFLMPDGF 72



 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 48/65 (73%), Positives = 54/65 (83%)
 Frame = +1

Query: 241 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 420
           P    K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VTN+ ARLR
Sbjct: 69  PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSNARLR 128

Query: 421 SQENE 435
           S+ENE
Sbjct: 129 SEENE 133


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 84  RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 179
           +DL  I   A T+LR +G+N+E+L+   AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199


>SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 414
           Y PK   K  V   K  ++++  N  YCA  A    SKK +L  E+ ++L  R  + A  
Sbjct: 64  YEPKVSAKQRVEEFKGEDLIVRNNEVYCA--ACKEVSKKHELNKEKLKKLGKREEDIAQA 121

Query: 415 LRSQE 429
           L   +
Sbjct: 122 LHKYD 126


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -3

Query: 235 MTGLLVGTVTNV--GHQV--LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRP 77
           M G  + T+T++   H+V  L +EP A  ++ T++FTP  + F+ A  +     +RP
Sbjct: 498 MYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGINDIRP 553


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 208 LRFQQEDPSYAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLI 363
           L+ Q+  PS  P+   +++V  ++E E+     RK+C EIA+  V S  R+++
Sbjct: 272 LKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIV 324


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 393 SDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHH 295
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 163 SPQAVQGSILDAQHWLRFQQE 225
           SP+A+QG ++ AQ W   +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +2

Query: 26  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 205
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 206 GYGSNKKTRHMLPNGF 253
           G  S K  R +L   F
Sbjct: 72  GRLSAKPERDVLMQDF 87


>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
          Length = 784

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 420 AEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHHQD 289
           AEA+   R   +ELL S  ++LP +RR  +        +  H D
Sbjct: 247 AEATNDFRQELSELLASARERLPFMRRSLLEIEATAQEIPTHVD 290


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 361 SASASSKRHHERSLRSTSCFASSRFPAL*HCEL 263
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -3

Query: 211  VTNVGHQVLTLEPPA---DSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSY 41
            V N+G + +  EPP     SVV+ S  T  PL FV++  + P  +L  L ++C   NR +
Sbjct: 3146 VNNLGSKFV--EPPVLDMSSVVDDSS-TRTPLIFVLSPGVDPTSALLQLAENCGMSNRFH 3202

Query: 40   S 38
            +
Sbjct: 3203 A 3203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,825,256
Number of Sequences: 59808
Number of extensions: 271692
Number of successful extensions: 1041
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)