Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20689
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_48430| Best HMM Match : PapG_C (HMM E-Value=3.6)                    28   8.4  

>SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 691 DVQKIKINVDIKIGSPPPAGSK--NDVFKFRSVNNIVIAPAKTGS 563
           D++ I +   +    PPP  +   +D+++F S NN+V+ P K  S
Sbjct: 524 DIRPIVLTCQVAKELPPPVMNYLVSDIYQFASNNNMVLNPKKCKS 568


>SB_48430| Best HMM Match : PapG_C (HMM E-Value=3.6)
          Length = 143

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 679 IKINVDIKIGSPPPAGSKNDVFKF---RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN 509
           I I++ I I    PA S N+       R+VNN +    K  S N    A   T H + GN
Sbjct: 64  ISISITITISITSPAKSNNNSISNNSNRNVNNSININGKNKSRNAEALATTATKHYDGGN 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,698
Number of Sequences: 59808
Number of extensions: 260814
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)