Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20688
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   154   1e-38
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   100   2e-22
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   100   4e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    79   5e-16
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        29   0.87 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.6  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   3.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   4.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   8.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  154 bits (374), Expect = 1e-38
 Identities = 67/83 (80%), Positives = 75/83 (90%)
 Frame = +3

Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
           +GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 55  AGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114

Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
           AVLDVVR+E E CD LQGFQLTH
Sbjct: 115 AVLDVVRREAEACDALQGFQLTH 137



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 36/55 (65%), Positives = 47/55 (85%)
 Frame = +1

Query: 82  MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
           MREIVH+QAGQCGNQ+GA FW  I++EHG+D  G+Y GTS+ Q ER++VY+NEA+
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA 55



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 36/46 (78%), Positives = 42/46 (91%)
 Frame = +1

Query: 574 PDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 711
           PDR+M T+SV P+PK SDTVVEPYNA LS+HQLVEN+DET+CIDNE
Sbjct: 160 PDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNE 205


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  100 bits (240), Expect = 2e-22
 Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
           +E+G GKYVPR+I +DLEP  +D VR+G Y  LF P+  + G+  A NN+A+GHYT G E
Sbjct: 54  SETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113

Query: 432 LVDAVLDVVRKECENCDCLQGFQLTH 509
           LVD V D +R+  +NC  LQGF + H
Sbjct: 114 LVDEVTDKIRRIADNCSGLQGFLVFH 139



 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = +1

Query: 595 YSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 711
           +SV P+P+VS +VVEPYN+VL+ H  ++  D T+ +DNE
Sbjct: 169 FSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNE 207



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +1

Query: 82  MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 183
           MREI+ +  GQ G QIG   WE+   EHGI P G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 43/86 (50%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
           +E+G GK+VPR+I +DLEP  +D VR+G Y  LF P+  V G+  A NN+A+GHYT G E
Sbjct: 58  SETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117

Query: 432 LVDAVLDVVRKECENCDCLQGFQLTH 509
           ++D+VL+ +R+  +NC  LQGF + H
Sbjct: 118 MIDSVLERIRRMADNCSGLQGFLVFH 143



 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 21/39 (53%), Positives = 32/39 (82%)
 Frame = +1

Query: 595 YSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 711
           +SV P+P+VS +VVEPYN+VL+ H  ++N+D T+ +DNE
Sbjct: 173 FSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNE 211



 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +1

Query: 82  MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNE 240
           MRE++ +  GQ G QIG   WE+   EHGI P G    T + ++ + + Y N+
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLND 51


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
 Frame = +3

Query: 270 KYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDA 443
           +Y+PRAIL+DLEP  ++ + S  YG L+ P+N +  ++  GAGNNWA G Y+    + + 
Sbjct: 59  RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117

Query: 444 VLDVVRKECENCDCLQGFQLTHPSA 518
           ++D++ +E +  D L+GF L H  A
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIA 142



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +1

Query: 85  REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 243
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R  V++ ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +1

Query: 568 RVPDRIMNTYSVVP-SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 708
           R P +I+ TYSV P S  VSD VV+PYN++L++ +L  N D    +DN
Sbjct: 160 RYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDN 207


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 402 AKGHYTEGAELVDAVLDVVRKECENCDCLQ 491
           A+GH   G ELV A  D +RK+ EN   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +3

Query: 477 CDCLQGFQLTHPSAAAPVP---AWATSSSQRSAKSTRQNHEHILSSPLAQSIRHCRRTIQ 647
           C C+ GFQ    +    V      A+SSS  SA +T      I +SP+  S  +   +I 
Sbjct: 317 CFCVVGFQQGTTAKIVVVDYSEEMASSSSSASATATSSAESSIATSPITSS-SNVVSSIS 375

Query: 648 RSSLHPSTSREY 683
            SS+  S    Y
Sbjct: 376 TSSMDSSAVSSY 387


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 121 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 222
           N++G    E+++E+  +DPT   +   DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 483 NRSSHTPCGLHQGRRRRAQR 424
           +R  H P G H GR RRA R
Sbjct: 50  SRMDHRPDGYHDGRGRRAYR 69


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 505 LIPRRRHRFRHGQPPHLK 558
           L+P R H+ RH  PP  K
Sbjct: 425 LLPERSHKHRHSAPPRSK 442


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 333 GAYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 434
           G YG +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,860
Number of Sequences: 5004
Number of extensions: 42081
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)