Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20686
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   2.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   2.6  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   4.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   5.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  

>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 28  AEDIKVYQRIFRGRHRNPGVTYQYTVDKQRLHKKHSYRLSEWT 156
           AE + V +  ++ R +     Y Y + + RLH+   +RLS+ T
Sbjct: 23  AEKLDVIEGKYQWREQKESDEYDYVLVESRLHELRRHRLSKNT 65


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 129 FLVKSLFVDRVLVCYARVAMSSSEYTLINFYIF 31
           F+++SL VDR+   Y ++A+S     + NFY F
Sbjct: 500 FILRSL-VDRLKSLYPKLALSQMSQLVKNFYAF 531


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +1

Query: 133 SYRLSEWTPCSVTCGVGYTRRYYECIDQHQRVVEQSQCY 249
           SY L  WT  SV    GY    YEC    +  VE +  Y
Sbjct: 257 SYDLIHWTELSVFSTSGYLGLQYECPGMARVPVEGTDEY 295


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 563 YCYANLIYETTYIIRTIFSCADRLA 489
           YC  NL+Y ++ I  T  S A+RLA
Sbjct: 222 YCNGNLLYPSSSISATCTSEAERLA 246


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 153 PFGQSVAVFLVKSLFVDRVLVCYARVAMSSSEYTLINFYI 34
           P   SV +FL + +F+  + +CY+ ++     + LI F I
Sbjct: 626 PDSFSVGIFLPQPMFIMLICLCYSIISPLILVFGLIYFII 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,839
Number of Sequences: 5004
Number of extensions: 58377
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)