Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20686
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0565 + 17207582-17207811,17208026-17208320 34 0.12
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667... 31 1.1
06_03_0579 + 22477171-22477359,22477486-22477767,22477774-224779... 31 1.1
04_03_0235 - 13111282-13111878 30 1.5
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927... 29 4.6
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109... 29 4.6
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 4.6
01_05_0739 + 24807181-24809121 29 4.6
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 4.6
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079... 28 8.0
>04_03_0565 + 17207582-17207811,17208026-17208320
Length = 174
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 243 VLPHEPPRHQALMKQCRKPACVHWWVGAW 329
VLP E +H +QCR+P +HWW W
Sbjct: 94 VLPRE--QHGVWRRQCRRPVQLHWWGVTW 120
>08_02_1605 -
28166338-28166418,28166496-28166567,28166655-28166771,
28166846-28166956,28167077-28167252,28167340-28167421,
28167662-28167808,28167887-28168252,28168558-28168741,
28169104-28169213,28169452-28169508,28169589-28169600,
28169899-28169961,28170010-28170057,28170166-28170246,
28170326-28170389,28170661-28170686,28170782-28170868,
28170942-28170969,28171194-28171255,28171364-28171576,
28171667-28171774,28171948-28172022,28172136-28172249,
28172597-28172644,28172688-28172767,28172974-28173049,
28173287-28173427,28173685-28173762,28175100-28175204,
28177061-28177147,28177287-28178579
Length = 1463
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = -2
Query: 213 INAFVISSRVSNSAGDGARRPFGQSVAVFLVKSLFVDRVLVCYARVAMSSSEYTLI 46
+NA IS RVSN G G R +V V + +SL + L+C A V S + L+
Sbjct: 307 LNA-AISVRVSNELGSGRPRAAMHAVVVVVAESLLIG--LLCMALVLAFSDKLALV 359
>06_03_0579 +
22477171-22477359,22477486-22477767,22477774-22477901,
22478088-22478499
Length = 336
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 249 PHEPPRHQALMKQCR 293
PH+P RHQAL QCR
Sbjct: 188 PHQPQRHQALQLQCR 202
>04_03_0235 - 13111282-13111878
Length = 198
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 252 HEPPRHQALMKQCRKPACVHWWVGAWNPCSKLCHMP 359
H PP + R+PA H W P S+ CH P
Sbjct: 89 HLPPLAAVITTNRRQPAVDHIWSPLQTPTSRSCHHP 124
>12_01_0934 -
9273325-9273807,9273898-9274062,9274155-9274235,
9274347-9274475,9274590-9274661,9274758-9274826,
9275143-9275514,9275590-9275703,9275729-9275848
Length = 534
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +3
Query: 3 KSSNIGTARRRYKSLSTYIPRTTSQPWRNIPVHGRQTKTSQETQLQTVRMDAVLRHLRSW 182
K + A R + + +P TT+ P + +PV ++ +QE + + V +SW
Sbjct: 409 KEKAMAAAERARERIRNKLPSTTTSPMKPLPVETKRGPLNQERKHIMTGKEIVPVFTKSW 468
Query: 183 I 185
+
Sbjct: 469 L 469
>08_02_0132 +
12908995-12909437,12909727-12910211,12910417-12910988,
12911080-12911211,12912184-12912939
Length = 795
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 367 SSPGMWQSL-EQGFHAPTHQWTH 302
S P W+SL E+G AP+ WTH
Sbjct: 138 SIPEAWESLQEKGHKAPSRPWTH 160
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +3
Query: 336 CSKLCHMPGEEVTKERSVYCVDKVMNKVVDDSECGQVIKPITTIKCADVPAC*TICTRKY 515
CSK+ P E + V K K D EC VI+P + K P RK+
Sbjct: 1624 CSKIHQSPDESRENDEPKVKVTKSDTKEKDSLECSSVIEPSSDRKLMQCPYDFEEICRKF 1683
Query: 516 GPNN 527
N+
Sbjct: 1684 VTND 1687
>01_05_0739 + 24807181-24809121
Length = 646
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +3
Query: 258 PPRHQALMKQCRKPACVHWWVGAWNPC-----SKLCHMPG-EEVTKERSVYC 395
P + ++ K C+ P CV GA C + C PG ++ + R++YC
Sbjct: 253 PQQRNSITKNCQFPGCVKGARGASGHCIAHGGGRRCQKPGCQKGAEGRTIYC 304
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -3
Query: 386 AAFFSDFFARHVAKLRARVPRADPPVDARRLPALLHEGLVSRR 258
A + SDFF+ A A A PP D LPA H G + R
Sbjct: 133 ADYGSDFFSELQAAAAAAAAAA-PPTDLASLPASNHNGATNNR 174
>02_05_0449 -
29107310-29107377,29107732-29107777,29107860-29107934,
29108053-29108122,29108313-29108408,29108728-29108914,
29109001-29109169,29109614-29109646,29109731-29109841,
29110070-29111256,29112380-29112448,29114417-29114975,
29115455-29115589,29115714-29115896
Length = 995
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/86 (24%), Positives = 32/86 (37%)
Frame = +3
Query: 39 KSLSTYIPRTTSQPWRNIPVHGRQTKTSQETQLQTVRMDAVLRHLRSWIHEKILRMH*ST 218
K S Y P T W P + + + TQ+ R + H R + +EK + S
Sbjct: 332 KHKSGYEPSDTETEWHESPWNDAVLPSGRNTQIGARRQNLSPNHTREYPNEKTSNLRNSR 391
Query: 219 STSGRTIPVLPHEPPRHQALMKQCRK 296
+ T V H+ H + RK
Sbjct: 392 TPPRFTEQV--HQNSSHSGGKNELRK 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,006
Number of Sequences: 37544
Number of extensions: 412106
Number of successful extensions: 1078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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