Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20686
(691 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 6.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 6.3
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 6.3
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 302 WLPCLLRMSRPGKKITKK 319
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 302 WLPCLLRMSRPGKKITKK 319
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 302 WLPCLLRMSRPGKKITKK 319
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 302 WLPCLLRMSRPGKKITKK 319
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 302 WLPCLLRMSRPGKKITKK 319
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 302 WLPCLLRMSRPGKKITKK 319
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = -2
Query: 99 VLVCYARVAMSSSEYTLINFYIFGERSR 16
+++C+ V + EY +N+ +G R++
Sbjct: 308 LVMCFVFVFAALLEYAAVNYTYWGARAK 335
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 370 WLPCLLRMSRPGKKITKK 387
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 327 WNPCSKLCHMPGEEVTKE 380
W PC PG+++TK+
Sbjct: 370 WLPCLLRMSRPGKKITKK 387
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 361 PGMWQSLEQGFHAPTH 314
PG Q+ +GF PTH
Sbjct: 398 PGRLQTKPEGFMIPTH 413
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 6.3
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +3
Query: 96 VHGRQTKTSQETQLQTVRMDAVLRHLRSWIHEKILRMH*STSTSGRTI 239
V G+Q + Q+TQ Q + + + L ++++ K++ T+G +
Sbjct: 1225 VLGKQQPSQQQTQQQPIILPSQLLNIKTLHGLKVIPTPAGLKTTGAAV 1272
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,748
Number of Sequences: 438
Number of extensions: 4130
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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