Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20686
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00350.1 68417.m00046 MATE efflux family protein similar to r...    30   1.3  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    29   3.8  
At1g17850.1 68414.m02209 expressed protein                             29   3.8  
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    29   3.8  
At2g24430.2 68415.m02920 no apical meristem (NAM) family protein...    28   5.1  
At2g24430.1 68415.m02919 no apical meristem (NAM) family protein...    28   5.1  
At5g64600.1 68418.m08118 expressed protein similar to axi 1 [Nic...    28   6.7  

>At4g00350.1 68417.m00046 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554
           Uncharacterized membrane protein family
          Length = 542

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 213 INAFVISSRVSNSAGDGARRPFGQSVAVFLVKSLFVDRVLVCYARVAMSSSEYTLI 46
           INA  IS RVSN  G G  R    SV V +++SL +   +VC   + ++  ++ +I
Sbjct: 366 INA-AISVRVSNELGSGHPRAAKYSVIVTVIESLVIG--VVCAIVILITRDDFAVI 418


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0,
            SP|O43520]; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1228

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +3

Query: 108  QTKTSQETQLQ-TVRMDAVLRHLRSWIHEK 194
            +TK  ++T++  T R+DA +RHLRS +++K
Sbjct: 1181 RTKAREKTKIGFTARVDAKIRHLRSKLNKK 1210


>At1g17850.1 68414.m02209 expressed protein
          Length = 423

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 346 SLEQGFHAPTHQWTHAGFLHCFMRAWCRGGSCGS-TGIVLPLVDVDQCIRN 197
           SL Q  H P H +T+   L  +   WC     G   G   P VD   C RN
Sbjct: 174 SLVQASHIPQHHFTYVQCLQIWCEIWCYEWDVGHFRGAHRPEVD---CFRN 221


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1218

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +3

Query: 108  QTKTSQETQLQ-TVRMDAVLRHLRSWIHEK 194
            +TK  ++T++  T R+DA +RHLRS +++K
Sbjct: 1171 RTKAREKTKIGFTARVDAKIRHLRSKLNKK 1200


>At2g24430.2 68415.m02920 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 316

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 58  FRGRHRNPGVTYQYTVDKQRLHKKHSYRLS---EWTPCSVTCGVGYTRRY 198
           +RGR    G    + + + RLH K SYR S   EW  C V      T++Y
Sbjct: 124 YRGRAPR-GEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKY 172


>At2g24430.1 68415.m02919 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 316

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 58  FRGRHRNPGVTYQYTVDKQRLHKKHSYRLS---EWTPCSVTCGVGYTRRY 198
           +RGR    G    + + + RLH K SYR S   EW  C V      T++Y
Sbjct: 124 YRGRAPR-GEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKY 172


>At5g64600.1 68418.m08118 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 522

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 413 VHYFIDAVHAAFFSDFFARHVAKLRARVPRADPPVDARRLPA-LLHEGL 270
           V Y+ +  H   + ++   HVAK  +R+   D P+D +RL   +L+ GL
Sbjct: 210 VGYYEEMTH--LWKEYKVIHVAKSDSRLANNDLPIDVQRLRCRVLYRGL 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,076
Number of Sequences: 28952
Number of extensions: 315836
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)