Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20685
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.58 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 30  AVPSTCPSLPSRM--VSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPT 194
           A  S+C  +P  +  + SR   PPA+ T    T+T   +TT + ++      T+  T
Sbjct: 74  AFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 670  VTLPSPLNRLRHSPP 714
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -3

Query: 740 EYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQ 561
           E+ G+   +G   ++L SG+    LD  GH  ++ ++   +G +I    +L +     V+
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGH--AAFISMRHRGAHITDIVVLVVAADDGVK 231

Query: 560 DSSLDS 543
           + +L S
Sbjct: 232 EQTLQS 237


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 734 SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 609
           SG +I   G+ + +++ +G   L      +S S+NT+  G Y
Sbjct: 342 SGYLIDEYGKKIDIYTPEGLNMLGNVIEGSSDSINTKFYGMY 383


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 116 HLPSGCRRRWISPRRYHP 63
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 734 SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 609
           SG +I   G+ + +++ +G   L       S S+NT+  G Y
Sbjct: 342 SGYLIDEYGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMY 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,033
Number of Sequences: 438
Number of extensions: 4712
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)