Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20684
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    31   0.17 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    29   0.91 
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    28   1.6  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    28   1.6  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.1  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    26   4.8  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.4  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   6.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.5  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    25   8.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.5  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.5  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = -2

Query: 309  TVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 130
            TV+   V   S ++ S  +S  SSV  +  LLS++  F +  F TG S  S+  + +G+ 
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542

Query: 129  SFLSTAASAIV 97
            S  S  +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 662 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 513
           ++LL       C  ++  L+LN+ +    L  +R +    ++  SGICGC
Sbjct: 93  KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 140 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEVRLLK 268
           +E  +   KES  K++PA+K +   A  NG E G   A   R  K
Sbjct: 53  DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRK 97


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 128 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 244
           ++ PE+    + +  PVKK P+KK + A++N  E   DE
Sbjct: 58  DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADE 95


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 122 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
           K+E  P E +  +P  SPV  S   K E +E   K   +DEAP+
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPK 527


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 95  ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMV 274
           A  A A + + +V+  + +  +PK++PV  S A +   A  N  +  T E       K+ 
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266

Query: 275 MLKK 286
             KK
Sbjct: 267 SKKK 270


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 321 FCGITVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSAASTFLAGDFLT 175
           F G  V+  +VAF   + +    +  +SVP    +L   S+F AG+FL+
Sbjct: 277 FVGCLVI-FVVAFSGFSAYFLLNAYQASVPIYTSMLYNYSSFQAGNFLS 324


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 467 YAWFTAMHQCPLEFTHIHISRSYKCITPILIASYY 571
           Y W T+ HQ   E+ +  I     C+T   I  YY
Sbjct: 107 YRWETSFHQYLAEYGYPCIRDEKSCVTISPIPKYY 141


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 256 SPAENGDAEESNDASENGDAT 318
           SP  NGD  E    +ENG+ T
Sbjct: 9   SPTTNGDKNEDGYPAENGEGT 29


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 295 HRCFLQHHHFQQANFW 248
           HR F + HHF++ N W
Sbjct: 273 HRGFFECHHFKKTNEW 288


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = -2

Query: 273 TIFSRRTSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 94
           ++ S   + ASS PF    ++++++   G+F T  + G+ +V+ S  T   +  +++ VA
Sbjct: 557 SVNSTTATSASSTPFGNSTITSSASGSTGEF-TNTNSGNGDVSGSVTTPTSTPLSNSTVA 615


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 348 FPLHTSLFLFCGITVLRCIVAFFSITIFS 262
           FP+   +F FC    +  IV+   +TIF+
Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,812
Number of Sequences: 5004
Number of extensions: 49073
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)