BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20684 (736 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.17 SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 29 0.91 SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 28 1.6 SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.6 SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 2.1 SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 26 4.8 SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.4 SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 6.4 SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.5 SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 25 8.5 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.5 SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.5 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 31.1 bits (67), Expect = 0.17 Identities = 23/71 (32%), Positives = 37/71 (52%) Frame = -2 Query: 309 TVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 130 TV+ V S ++ S +S SSV + LLS++ F + F TG S S+ + +G+ Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542 Query: 129 SFLSTAASAIV 97 S S +S+ V Sbjct: 3543 SSSSLVSSSPV 3553 >SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 related|Schizosaccharomyces pombe|chr 2|||Manual Length = 773 Score = 28.7 bits (61), Expect = 0.91 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = -3 Query: 662 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 513 ++LL C ++ L+LN+ + L +R + ++ SGICGC Sbjct: 93 KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142 >SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor complex subunit Spp27|Schizosaccharomyces pombe|chr 3|||Manual Length = 233 Score = 27.9 bits (59), Expect = 1.6 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 140 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEVRLLK 268 +E + KES K++PA+K + A NG E G A R K Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRK 97 >SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosaccharomyces pombe|chr 3|||Manual Length = 822 Score = 27.9 bits (59), Expect = 1.6 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +2 Query: 128 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 244 ++ PE+ + + PVKK P+KK + A++N E DE Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADE 95 >SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 27.5 bits (58), Expect = 2.1 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 122 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253 K+E P E + +P SPV S K E +E K +DEAP+ Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPK 527 >SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 278 Score = 26.2 bits (55), Expect = 4.8 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +2 Query: 95 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMV 274 A A A + + +V+ + + +PK++PV S A + A N + T E K+ Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266 Query: 275 MLKK 286 KK Sbjct: 267 SKKK 270 >SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 471 Score = 25.8 bits (54), Expect = 6.4 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -2 Query: 321 FCGITVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSAASTFLAGDFLT 175 F G V+ +VAF + + + +SVP +L S+F AG+FL+ Sbjct: 277 FVGCLVI-FVVAFSGFSAYFLLNAYQASVPIYTSMLYNYSSFQAGNFLS 324 >SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1086 Score = 25.8 bits (54), Expect = 6.4 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +2 Query: 467 YAWFTAMHQCPLEFTHIHISRSYKCITPILIASYY 571 Y W T+ HQ E+ + I C+T I YY Sbjct: 107 YRWETSFHQYLAEYGYPCIRDEKSCVTISPIPKYY 141 >SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Spt6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1365 Score = 25.4 bits (53), Expect = 8.5 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 256 SPAENGDAEESNDASENGDAT 318 SP NGD E +ENG+ T Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29 >SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharomyces pombe|chr 3|||Manual Length = 322 Score = 25.4 bits (53), Expect = 8.5 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -1 Query: 295 HRCFLQHHHFQQANFW 248 HR F + HHF++ N W Sbjct: 273 HRGFFECHHFKKTNEW 288 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 25.4 bits (53), Expect = 8.5 Identities = 15/60 (25%), Positives = 33/60 (55%) Frame = -2 Query: 273 TIFSRRTSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 94 ++ S + ASS PF ++++++ G+F T + G+ +V+ S T + +++ VA Sbjct: 557 SVNSTTATSASSTPFGNSTITSSASGSTGEF-TNTNSGNGDVSGSVTTPTSTPLSNSTVA 615 >SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 525 Score = 25.4 bits (53), Expect = 8.5 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -2 Query: 348 FPLHTSLFLFCGITVLRCIVAFFSITIFS 262 FP+ +F FC + IV+ +TIF+ Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,607,812 Number of Sequences: 5004 Number of extensions: 49073 Number of successful extensions: 183 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 183 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 347244562 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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