Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20684
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 34 0.10
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 33 0.18
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 33 0.24
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 31 0.72
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 31 1.3
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 31 1.3
09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052... 30 1.7
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 30 1.7
08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444 29 2.9
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 2.9
09_06_0240 + 21797458-21799369,21799636-21799784 29 3.8
02_02_0489 + 10869482-10871218 29 3.8
04_03_1043 - 21957041-21957256,21957347-21957517,21957979-219580... 29 5.1
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608 29 5.1
06_02_0083 - 11539955-11540257,11540594-11540742,11540938-115410... 28 6.7
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290... 28 8.8
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 28 8.8
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKV-EAAESNGKENGTDEAPEVRLLKMVMLK 283
D D K P T+ + ++ P KK PA + + ++ K G AP R ++ K
Sbjct: 389 DPPEDNKASKPNAATAADGQKPPAKKKPAARPGDTTAASAKVAGVKRAPSDRQEELATKK 448
Query: 284 KATMH-LRTVMPQKR 325
KA ++ ++T+ K+
Sbjct: 449 KAKLNKIKTLATDKK 463
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +2
Query: 122 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKKATMHL 301
KK V P+ +S+E KE KKS KKV + E G E+R +LKK +
Sbjct: 543 KKSVTPKRPSSSE-KEIKDKKSSGKKVTKGKGESAEVGLPSKDELRKTITEILKKVDFNT 601
Query: 302 RT 307
T
Sbjct: 602 AT 603
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2
Query: 122 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAES 217
K E PE+ T T PKE P KK+ K+ E AES
Sbjct: 476 KNETRPEK-TETAPKEKPSKKNRKKEKEVAES 506
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 104 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLK 283
A +A +K V + V S E + K+ P KKVE++ S + ++E + + K V K
Sbjct: 39 AVSAKKQKTVREKVVPSKEEAKKVKKQPPPKKVESSSSEEDSSESEEEVKAQPKKTVQPK 98
Query: 284 KA 289
KA
Sbjct: 99 KA 100
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 116 VDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKKATM 295
+D + VTS+ PK+S V+ P +V A +EN + + + LK KA +
Sbjct: 141 LDGHNIVKFVVTSSSPKKSLVQLVPGTEVAVAPKKRRENSSQDVQKQSALKEEAQTKALL 200
Query: 296 HLR 304
++
Sbjct: 201 RVQ 203
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 137 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGT 238
P EV E + SP KS +E S KENGT
Sbjct: 1165 PSEVVDDEDQRSPPPKSDHSLIEKESSEVKENGT 1198
>09_04_0692 +
19502878-19502920,19505011-19505104,19505196-19505227,
19505833-19506074,19506758-19506994,19508283-19508396
Length = 253
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 527 RSYKCITPILIASYYEGLSSFVSDLSLGLYNNKYIVY*ILPVKVPANCKFMYVTASD*MH 706
+ Y C P+ + + + +SDL+ Y Y+ L V+V ANC+ + +D ++
Sbjct: 143 KPYICTMPLKLEDGWNNIQLNLSDLTKRAYGTNYVE--TLRVQVHANCRLRRIYFADRLY 200
Query: 707 RSE 715
E
Sbjct: 201 SEE 203
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 116 VDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAE 214
V KK P+E + E K+ K++P KVEA+E
Sbjct: 239 VQKKAAPPKESKAKEAKKEAPKEAPKPKVEASE 271
>08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444
Length = 391
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 264 SRRTSGAS-SVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATS 127
SR GA ++P + PL++AAS+ D G G E +SS A +
Sbjct: 192 SRSRGGAGRAMPINAPLVAAASSSSGSDHSGGGDDGGSETSSSSAAA 238
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 122 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
K E + EE + EPK PAK+ AE+ E PE
Sbjct: 171 KAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPE 214
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 116 VDKKEV--APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMV 274
+D KE +PEEV + PK+ P KK K A + E +EA V +K V
Sbjct: 173 MDDKEAMPSPEEVVAAAPKQKPRKKKGRKAAAKAAAAAVEE-EEEAKVVEPVKEV 226
>02_02_0489 + 10869482-10871218
Length = 578
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLK 268
++ E + + +EP+ PVKK AKK + AE+ K + AP + K
Sbjct: 89 EEGEEVEGDSSESEPEPEPVKKESAKKAK-AEAKKKRAAPEPAPSGKAKK 137
>04_03_1043 -
21957041-21957256,21957347-21957517,21957979-21958019,
21958465-21958525,21959191-21960075
Length = 457
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +2
Query: 485 MHQCPLEFTHIHISRSYK-----CI-TPILIASYYEGLSSFVSDLSLGLYNN 622
+H+C +EF+HI S K CI + +A L+S DLS G Y N
Sbjct: 197 LHRCHIEFSHIESSTLNKLVIEGCIGCSLSLAISAPRLASLCLDLSYGAYKN 248
>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
Length = 241
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 451 NLLNYICLVYCNASMPIRVHSHPHIPLLQM-YYTHTD 558
N N CL C + P SH H PLLQ+ Y + D
Sbjct: 29 NEKNIFCLACCTSICPHCAPSHRHHPLLQVRRYVYND 65
>06_02_0083 -
11539955-11540257,11540594-11540742,11540938-11541025,
11541151-11541462,11541554-11541709,11541941-11542156,
11542251-11542508,11542740-11542943,11543052-11543096
Length = 576
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 170 SPVKKSPAKKVEAAESNGKENGT 238
SP + AKKV A+SNG NGT
Sbjct: 499 SPNRPVSAKKVPGAKSNGSANGT 521
>10_01_0275 -
2904601-2904900,2905083-2905233,2905522-2905598,
2907201-2907390,2908796-2908981,2910521-2910571,
2911476-2911885,2912252-2912509,2912768-2913070
Length = 641
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 145 FLRCNFLLVDGCVCHCCKV 89
F RC FLL C+ +CCK+
Sbjct: 423 FGRCCFLLKSVCLANCCKI 441
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 113 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
A + K + E S P+E+PV+K+ K + AES N DE P+
Sbjct: 2 AAEAKAPSLAEEYSLPPQEAPVEKAVEDKPQEAESISVTN--DETPQ 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,715
Number of Sequences: 37544
Number of extensions: 292934
Number of successful extensions: 1012
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -