BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20684 (736 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 34 0.085 At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 33 0.26 At3g23660.1 68416.m02975 transport protein, putative similar to ... 31 0.60 At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 31 1.0 At4g02810.1 68417.m00381 expressed protein 29 2.4 At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 29 3.2 At4g07380.1 68417.m01133 hypothetical protein 29 4.2 At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 4.2 At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 29 4.2 At5g58280.1 68418.m07296 transcriptional factor B3 family protei... 28 5.6 At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 28 5.6 At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 28 5.6 At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 28 5.6 At1g04430.1 68414.m00434 dehydration-responsive protein-related ... 28 5.6 At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 28 7.4 At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 28 7.4 At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 28 7.4 At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 28 7.4 At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r... 28 7.4 At5g64880.1 68418.m08161 expressed protein 27 9.8 At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 27 9.8 At4g31880.1 68417.m04531 expressed protein 27 9.8 At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 27 9.8 At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 27 9.8 At1g56660.1 68414.m06516 expressed protein 27 9.8 At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 27 9.8 At1g25886.1 68414.m03180 Ulp1 protease family protein contains P... 27 9.8 At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 27 9.8 At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 27 9.8 >At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 308 Score = 34.3 bits (75), Expect = 0.085 Identities = 14/27 (51%), Positives = 21/27 (77%) Frame = +1 Query: 253 SSPAENGDAEESNDASENGDATEKKET 333 +S +E+GD+ E+N+ASE+GD E K T Sbjct: 275 ASESEDGDSVEANNASEDGDTVEDKNT 301 >At4g08310.1 68417.m01372 expressed protein glutamic acid-rich protein precursor - Plasmodium falciparum, PIR2:A54514 Length = 504 Score = 32.7 bits (71), Expect = 0.26 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = +1 Query: 250 RSSPAENGDAEESNDASENGDATEKKETGVKRK 348 +S+PA+N D+EE D S+ D E KE VK+K Sbjct: 251 KSTPAKNSDSEEMFD-SDGEDEEEDKEVAVKKK 282 >At3g23660.1 68416.m02975 transport protein, putative similar to Swiss-Prot:Q15436 protein transport protein Sec23A [Homo sapiens] Length = 765 Score = 31.5 bits (68), Expect = 0.60 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -2 Query: 339 HTSLFLFCGITVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSA 208 +TS + CG+ C+ FF I+ T GA++ F L L++ Sbjct: 444 NTSAWRLCGLDKTTCLTIFFDISSSGSNTPGAANPQFYLQFLTS 487 >At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 236 Score = 30.7 bits (66), Expect = 1.0 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Frame = +2 Query: 92 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPA--------KKVEAAESNGKENGTDEA 247 L T + V + EV P EP+E PV +P VEAA S+ +N T + Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAASSSSSDNKTVVS 199 Query: 248 PEVRL 262 P RL Sbjct: 200 PASRL 204 >At4g02810.1 68417.m00381 expressed protein Length = 271 Score = 29.5 bits (63), Expect = 2.4 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Frame = +2 Query: 173 PVKKSPAKKVE---AAESNGKENGTDEAPEVRLLKMVMLKKATMHLRTVMPQKRKRLV*R 343 P++K K+ ES G ENG+D E+ LL + + T PQK + R Sbjct: 53 PIEKRSVAKLSLEMCTESLGTENGSDSGDEMSLLALEATNISKSPRLTTKPQKETSFMTR 112 Query: 344 GN 349 N Sbjct: 113 EN 114 >At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam domain, PF00538: linker histone H1 and H5 family;similar to HMG I/Y like protein (GI:15706274) [Glycine max];similar to HMR1 protein (GI:4218141) [Antirrhinum majus]; similar to high mobility group protein (GI:1483173) [Canavalia gladiata] Length = 480 Score = 29.1 bits (62), Expect = 3.2 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +2 Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPEVR 259 +A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E + Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGETQ 467 >At4g07380.1 68417.m01133 hypothetical protein Length = 168 Score = 28.7 bits (61), Expect = 4.2 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +2 Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA-PEVRLLKMVMLKK 286 D + + EEV+ E + K K E ++NG++NGT+ PE+ +++ K+ Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVELPAKKR 141 >At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar protein NAP57) {Rattus norvegicus}; contains Pfam profiles PF01509: TruB family pseudouridylate synthase (N terminal domain), PF01472: PUA domain; supporting cDNA gi|8901185|gb|AF234984.2|AF234984 Length = 565 Score = 28.7 bits (61), Expect = 4.2 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +2 Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLK 268 DKKE EEV S PK KK +K EAA E+ +++ + + K Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKKK 551 >At1g01490.1 68414.m00065 heavy-metal-associated domain-containing protein contains Pfam profile PF00403: Heavy-metal-associated domain Length = 177 Score = 28.7 bits (61), Expect = 4.2 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +2 Query: 101 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253 M D + PE+ EPK+ + P K+ EA + GK+ G EAP+ Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEG--EAPK 110 >At5g58280.1 68418.m07296 transcriptional factor B3 family protein contains Pfam profile PF02362: B3 DNA binding domain Length = 273 Score = 28.3 bits (60), Expect = 5.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 253 SSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 360 ++P+E + EE D E+GD E KR SV L Sbjct: 233 TTPSEEEEEEEDKDVEESGD-EEHSSRATKRSSVRL 267 >At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron superoxide dismutase, putative similar to Fe-superoxide dismutase precursor [Medicago sativa] gi|16974682|gb|AAL32441 Length = 305 Score = 28.3 bits (60), Expect = 5.6 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +2 Query: 143 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRL 262 E ST ES + ++ ++ E E+ +EN DE PEV L Sbjct: 257 ETVSTR-LESAIARAVQREQEGTETEDEENPDDEVPEVYL 295 >At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / methionine aminopeptidase, putative / peptidase M, putative similar to Methionine aminopeptidase 2 (EC 3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo sapiens} SP|P50579; contains Pfam profile PF00557: metallopeptidase family M24; supporting cDNA gi|11344921|gb|AF300880.1|AF300880 Length = 439 Score = 28.3 bits (60), Expect = 5.6 Identities = 19/72 (26%), Positives = 30/72 (41%) Frame = +2 Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286 D AV V S+ KE ++ +KK+E AE +EN +E + KK Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66 Query: 287 ATMHLRTVMPQK 322 + +PQ+ Sbjct: 67 NKSKKKKELPQQ 78 >At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / methionine aminopeptidase, putative / peptidase M, putative similar to Methionine aminopeptidase 2 (EC 3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo sapiens} SP|P50579; contains Pfam profile PF00557: metallopeptidase family M24; supporting cDNA gi|11344921|gb|AF300880.1|AF300880 Length = 439 Score = 28.3 bits (60), Expect = 5.6 Identities = 19/72 (26%), Positives = 30/72 (41%) Frame = +2 Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286 D AV V S+ KE ++ +KK+E AE +EN +E + KK Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66 Query: 287 ATMHLRTVMPQK 322 + +PQ+ Sbjct: 67 NKSKKKKELPQQ 78 >At1g04430.1 68414.m00434 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase Length = 623 Score = 28.3 bits (60), Expect = 5.6 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = -2 Query: 297 CIVAFFSITIF---SRRTSGASSVPFSLPLLSAASTFLAGDFLTGDS 166 C+VA F +F + GAS++ + L S++L+GD GD+ Sbjct: 19 CVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDDNGDT 65 >At4g39040.2 68417.m05530 expressed protein contains PF01985: Uncharacterised protein family Length = 280 Score = 27.9 bits (59), Expect = 7.4 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 274 DAEESNDASENGDATEKKETGVKRKS 351 D+E S + SE GD EK E K+KS Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146 >At4g39040.1 68417.m05529 expressed protein contains PF01985: Uncharacterised protein family Length = 296 Score = 27.9 bits (59), Expect = 7.4 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 274 DAEESNDASENGDATEKKETGVKRKS 351 D+E S + SE GD EK E K+KS Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146 >At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At1g25886, At4g03300 Length = 1463 Score = 27.9 bits (59), Expect = 7.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330 +P S A+ D ++ND S+N A E KE Sbjct: 716 NPGSDEADKTDIPKNNDESDNATAVEAKE 744 >At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At1g25886 Length = 1285 Score = 27.9 bits (59), Expect = 7.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330 +P S A+ D ++ND S+N A E KE Sbjct: 932 NPGSDEADKTDIHKNNDESDNAAAVEAKE 960 >At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-related identical to cDNA bHLH transcription factor (bHLH gamma gene) GI:32562999; weak similarity to bHLH transcription activator anthocyanin 1 [Petunia x hybrida] GI:10998404 Length = 720 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/72 (19%), Positives = 30/72 (41%) Frame = +2 Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKKATMH 298 +KK P E + P++ + + K++ NG + D E + M+ L+ T H Sbjct: 540 NKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHMLFLQNVTKH 599 Query: 299 LRTVMPQKRKRL 334 + +++ Sbjct: 600 AEKLSKSANEKM 611 >At5g64880.1 68418.m08161 expressed protein Length = 171 Score = 27.5 bits (58), Expect = 9.8 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -2 Query: 330 LFLFCGITVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSAASTFLAGD 184 + +F + +L C++ FS I S + SVP S S + FL+G+ Sbjct: 25 MLVFVLLLLLLCVIGIFSFDIVDNSYSSSDSVP-STSGSSLSKRFLSGN 72 >At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain Length = 1204 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330 +P S A+ D ++ND S+N A E KE Sbjct: 855 NPGSDEADKTDIPKNNDESDNAAAVEAKE 883 >At4g31880.1 68417.m04531 expressed protein Length = 873 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 110 AAVDKKEVAPEEVTSTEPKESPVKKSPAK 196 A+ KKE + TS++ K PVK PAK Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAK 813 >At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At4g05280, At1g25886, At4g03300 Length = 1139 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330 +P S A+ D ++ND S+N A E KE Sbjct: 790 NPGSDEADKTDIPKNNDESDNAAAVEAKE 818 >At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing protein similar to CXC domain containing TSO1-like protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC domain protein TSO1 [Arabidopsis thaliana] GI:7767425; contains Pfam profile PF03638: Tesmin/TSO1-like CXC domain Length = 639 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 52 FYSLFKLFHFFNLPCNNGRRSRRQEGSCT 138 FYSL F++ CNN +EGSC+ Sbjct: 229 FYSLASEPQQFSIYCNNSNYVEEREGSCS 257 >At1g56660.1 68414.m06516 expressed protein Length = 522 Score = 27.5 bits (58), Expect = 9.8 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253 +K E PEE KE + +K E E +GK+N E E Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDE 184 >At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At1g25886, At4g03300 Length = 1383 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330 +P S A+ D ++ND S+N A E KE Sbjct: 792 NPGSDEADKTDIPKNNDESDNAAAVEAKE 820 >At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At4g03300 Length = 1201 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330 +P S A+ D ++ND S+N A E KE Sbjct: 822 NPGSDEADKTDIPKNNDESDNAAAVEAKE 850 >At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative (COX6b) nearly identical to subunit 6b of cytochrome c oxidase [Arabidopsis thaliana] GI:6518353 Length = 191 Score = 27.5 bits (58), Expect = 9.8 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = +2 Query: 119 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPE 253 +K E APE EV S P E +++PA AAE N EN ++E E Sbjct: 67 EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAE 111 >At1g17370.1 68414.m02118 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 419 Score = 27.5 bits (58), Expect = 9.8 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +2 Query: 134 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253 A + TS E K+S KS + +GK+ EAPE Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPE 254 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,500,013 Number of Sequences: 28952 Number of extensions: 252280 Number of successful extensions: 935 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 886 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 934 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1614253080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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