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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20684
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    34   0.085
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    33   0.26 
At3g23660.1 68416.m02975 transport protein, putative similar to ...    31   0.60 
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa...    31   1.0  
At4g02810.1 68417.m00381 expressed protein                             29   2.4  
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P...    29   3.2  
At4g07380.1 68417.m01133 hypothetical protein                          29   4.2  
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ...    29   4.2  
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin...    29   4.2  
At5g58280.1 68418.m07296 transcriptional factor B3 family protei...    28   5.6  
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i...    28   5.6  
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me...    28   5.6  
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me...    28   5.6  
At1g04430.1 68414.m00434 dehydration-responsive protein-related ...    28   5.6  
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc...    28   7.4  
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc...    28   7.4  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   7.4  
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P...    28   7.4  
At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r...    28   7.4  
At5g64880.1 68418.m08161 expressed protein                             27   9.8  
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P...    27   9.8  
At4g31880.1 68417.m04531 expressed protein                             27   9.8  
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P...    27   9.8  
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ...    27   9.8  
At1g56660.1 68414.m06516 expressed protein                             27   9.8  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    27   9.8  
At1g25886.1 68414.m03180 Ulp1 protease family protein contains P...    27   9.8  
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati...    27   9.8  
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ...    27   9.8  

>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +1

Query: 253 SSPAENGDAEESNDASENGDATEKKET 333
           +S +E+GD+ E+N+ASE+GD  E K T
Sbjct: 275 ASESEDGDSVEANNASEDGDTVEDKNT 301


>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 250 RSSPAENGDAEESNDASENGDATEKKETGVKRK 348
           +S+PA+N D+EE  D S+  D  E KE  VK+K
Sbjct: 251 KSTPAKNSDSEEMFD-SDGEDEEEDKEVAVKKK 282


>At3g23660.1 68416.m02975 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 765

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 339 HTSLFLFCGITVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSA 208
           +TS +  CG+    C+  FF I+     T GA++  F L  L++
Sbjct: 444 NTSAWRLCGLDKTTCLTIFFDISSSGSNTPGAANPQFYLQFLTS 487


>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 236

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +2

Query: 92  LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPA--------KKVEAAESNGKENGTDEA 247
           L T +   V + EV P      EP+E PV  +P           VEAA S+  +N T  +
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAASSSSSDNKTVVS 199

Query: 248 PEVRL 262
           P  RL
Sbjct: 200 PASRL 204


>At4g02810.1 68417.m00381 expressed protein 
          Length = 271

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 173 PVKKSPAKKVE---AAESNGKENGTDEAPEVRLLKMVMLKKATMHLRTVMPQKRKRLV*R 343
           P++K    K+      ES G ENG+D   E+ LL +     +     T  PQK    + R
Sbjct: 53  PIEKRSVAKLSLEMCTESLGTENGSDSGDEMSLLALEATNISKSPRLTTKPQKETSFMTR 112

Query: 344 GN 349
            N
Sbjct: 113 EN 114


>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family;similar
           to HMG I/Y like protein (GI:15706274) [Glycine
           max];similar to HMR1 protein (GI:4218141) [Antirrhinum
           majus]; similar to high mobility group protein
           (GI:1483173) [Canavalia gladiata]
          Length = 480

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPEVR 259
           +A    + V P+ +   +P+E+   ++ A++ EAAE+  G+E G +   E +
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGETQ 467


>At4g07380.1 68417.m01133 hypothetical protein 
          Length = 168

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA-PEVRLLKMVMLKK 286
           D  + + EEV+  E   +   K   K  E  ++NG++NGT+   PE+  +++   K+
Sbjct: 85  DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVELPAKKR 141


>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
           NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
           protein NAP57) {Rattus norvegicus}; contains Pfam
           profiles PF01509: TruB family pseudouridylate synthase
           (N terminal domain), PF01472: PUA domain; supporting
           cDNA gi|8901185|gb|AF234984.2|AF234984
          Length = 565

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLK 268
           DKKE   EEV S  PK    KK  +K  EAA     E+  +++ + +  K
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKKK 551


>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 177

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 101 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
           M D  +      PE+    EPK+    + P K+ EA +  GK+ G  EAP+
Sbjct: 62  MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEG--EAPK 110


>At5g58280.1 68418.m07296 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 273

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 253 SSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 360
           ++P+E  + EE  D  E+GD  E      KR SV L
Sbjct: 233 TTPSEEEEEEEDKDVEESGD-EEHSSRATKRSSVRL 267


>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
           superoxide dismutase, putative similar to Fe-superoxide
           dismutase precursor [Medicago sativa]
           gi|16974682|gb|AAL32441
          Length = 305

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 143 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRL 262
           E  ST   ES + ++  ++ E  E+  +EN  DE PEV L
Sbjct: 257 ETVSTR-LESAIARAVQREQEGTETEDEENPDDEVPEVYL 295


>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to Methionine aminopeptidase 2 (EC
           3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
           sapiens} SP|P50579; contains Pfam profile PF00557:
           metallopeptidase family M24; supporting cDNA
           gi|11344921|gb|AF300880.1|AF300880
          Length = 439

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +2

Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286
           D AV    V      S+  KE  ++   +KK+E AE   +EN  +E  +         KK
Sbjct: 7   DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66

Query: 287 ATMHLRTVMPQK 322
                +  +PQ+
Sbjct: 67  NKSKKKKELPQQ 78


>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to Methionine aminopeptidase 2 (EC
           3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
           sapiens} SP|P50579; contains Pfam profile PF00557:
           metallopeptidase family M24; supporting cDNA
           gi|11344921|gb|AF300880.1|AF300880
          Length = 439

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +2

Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286
           D AV    V      S+  KE  ++   +KK+E AE   +EN  +E  +         KK
Sbjct: 7   DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66

Query: 287 ATMHLRTVMPQK 322
                +  +PQ+
Sbjct: 67  NKSKKKKELPQQ 78


>At1g04430.1 68414.m00434 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 623

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 297 CIVAFFSITIF---SRRTSGASSVPFSLPLLSAASTFLAGDFLTGDS 166
           C+VA F   +F      + GAS++ +   L    S++L+GD   GD+
Sbjct: 19  CVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDDNGDT 65


>At4g39040.2 68417.m05530 expressed protein contains PF01985:
           Uncharacterised protein family
          Length = 280

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 274 DAEESNDASENGDATEKKETGVKRKS 351
           D+E S + SE GD  EK E   K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146


>At4g39040.1 68417.m05529 expressed protein contains PF01985:
           Uncharacterised protein family
          Length = 296

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 274 DAEESNDASENGDATEKKETGVKRKS 351
           D+E S + SE GD  EK E   K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330
           +P S  A+  D  ++ND S+N  A E KE
Sbjct: 716 NPGSDEADKTDIPKNNDESDNATAVEAKE 744


>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At1g25886
          Length = 1285

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 244  SPRSSPAENGDAEESNDASENGDATEKKE 330
            +P S  A+  D  ++ND S+N  A E KE
Sbjct: 932  NPGSDEADKTDIHKNNDESDNAAAVEAKE 960


>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
           protein-related identical to cDNA bHLH transcription
           factor (bHLH gamma gene) GI:32562999; weak similarity to
           bHLH transcription activator anthocyanin 1 [Petunia x
           hybrida] GI:10998404
          Length = 720

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/72 (19%), Positives = 30/72 (41%)
 Frame = +2

Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKKATMH 298
           +KK   P E +   P++  + +   K++     NG +   D   E  +  M+ L+  T H
Sbjct: 540 NKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHMLFLQNVTKH 599

Query: 299 LRTVMPQKRKRL 334
              +     +++
Sbjct: 600 AEKLSKSANEKM 611


>At5g64880.1 68418.m08161 expressed protein
          Length = 171

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 330 LFLFCGITVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSAASTFLAGD 184
           + +F  + +L C++  FS  I     S + SVP S    S +  FL+G+
Sbjct: 25  MLVFVLLLLLLCVIGIFSFDIVDNSYSSSDSVP-STSGSSLSKRFLSGN 72


>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1204

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330
           +P S  A+  D  ++ND S+N  A E KE
Sbjct: 855 NPGSDEADKTDIPKNNDESDNAAAVEAKE 883


>At4g31880.1 68417.m04531 expressed protein
          Length = 873

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 110 AAVDKKEVAPEEVTSTEPKESPVKKSPAK 196
           A+  KKE   +  TS++ K  PVK  PAK
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAK 813


>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
           At1g25886, At4g03300
          Length = 1139

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330
           +P S  A+  D  ++ND S+N  A E KE
Sbjct: 790 NPGSDEADKTDIPKNNDESDNAAAVEAKE 818


>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain
          Length = 639

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  FYSLFKLFHFFNLPCNNGRRSRRQEGSCT 138
           FYSL      F++ CNN      +EGSC+
Sbjct: 229 FYSLASEPQQFSIYCNNSNYVEEREGSCS 257


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
           +K E  PEE      KE   +    +K E  E +GK+N   E  E
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDE 184


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1383

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330
           +P S  A+  D  ++ND S+N  A E KE
Sbjct: 792 NPGSDEADKTDIPKNNDESDNAAAVEAKE 820


>At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At4g05280, At4g03300
          Length = 1201

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330
           +P S  A+  D  ++ND S+N  A E KE
Sbjct: 822 NPGSDEADKTDIPKNNDESDNAAAVEAKE 850


>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
           (COX6b) nearly identical to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353
          Length = 191

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 119 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPE 253
           +K E APE  EV S  P   E   +++PA    AAE N  EN ++E  E
Sbjct: 67  EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAE 111


>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein [Nicotiana
           plumbaginifolia] GI:6996560; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 419

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 134 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
           A +  TS E K+S   KS  +       +GK+    EAPE
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPE 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,500,013
Number of Sequences: 28952
Number of extensions: 252280
Number of successful extensions: 935
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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