Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20683
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.86 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   1.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c...    27   3.5  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    26   4.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   4.6  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    26   4.6  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 431 HCGNVQSCRECVSLQDPHCAW 493
           HCG   +C+ C++  D HC W
Sbjct: 415 HCG---ACKRCINRYDHHCPW 432


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 302 RTAVISEEQVLPQGVPIKQMHVALTTEKLIVASGDIIKAVTLSH 433
           +T  ++EE ++ QG+         + EKL  AS D I A+  +H
Sbjct: 486 KTGTLTEEHMVVQGIAGVNRKDPYSLEKLSDASNDAILAIATAH 529


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 93  FLARPILIRVSLQYRFSAIAVHPQVQAMNGNKYDVLYIGTDDGRVIKAVNVASNKAFLTR 272
           FL+R +   +SL    +    H  +Q ++G  Y  L +GT    V   +    +   +TR
Sbjct: 166 FLSRSVTYSISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLSYVSLIIFDLPSNLLMTR 225

Query: 273 A 275
           A
Sbjct: 226 A 226


>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 601 GAYYKYQSFHVLHFVRISQDSEI 533
           G Y KY  F+ L FVR+ Q++ I
Sbjct: 33  GFYRKYHGFNSLRFVRVLQEAGI 55


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 631 CYVVHPVTERGAYYKYQSFHVLHFVRI--SQDSEIVCSQPMNILFL-GVPSAVW 479
           C +V P     A+Y  ++ H  HF+R   +  S I C+  ++++ +  VPS ++
Sbjct: 202 CRLVLPSILSPAFYSIRATHPQHFIRFIHTLSSLIKCTTSVHLICMCSVPSTLF 255


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 192 DVLYIGTDDGRVIKAV 239
           DVL IG+ DGRVI+A+
Sbjct: 11  DVLVIGSADGRVIEAI 26


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 409 NITRSHYQFFSGQSNVHLFDRYTLRQ 332
           N   + Y F +  SNVHL DRY + +
Sbjct: 72  NSPENLYLFINHPSNVHLVDRYLIHR 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,058
Number of Sequences: 5004
Number of extensions: 57796
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)