Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20683
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258...    29   3.6  
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    28   6.3  
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391...    28   6.3  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    28   8.4  
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468...    28   8.4  

>05_01_0329 -
           2580083-2580115,2580787-2580864,2580986-2581078,
           2581209-2581326,2583350-2583440,2585167-2585207,
           2585854-2585981,2586078-2586353,2587318-2587472,
           2587557-2587700,2587991-2588567
          Length = 577

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 293 NPVRTAVISEEQVLPQGVPIKQMHVALTTEKLIVASGDIIKAVTLSH 433
           NP    VIS +  + +G+ +K++      EKL V  GD+IK     H
Sbjct: 489 NPAHLEVISCKCNIDEGLIVKEVSEGSIAEKLGVRVGDVIKFFNGKH 535


>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 407 IIKAVTLSHCGNVQSCRECVSLQDPHCAWDS 499
           II+ +   HC    +C+ CV   D HC W S
Sbjct: 379 IIRPMRSKHC---PTCKHCVEQFDHHCPWIS 406


>04_04_1120 +
           31037811-31038813,31038903-31038991,31039094-31039163,
           31039270-31039353,31039452-31039528,31039631-31039712,
           31039847-31039929,31040270-31040333,31040435-31040566,
           31040674-31040777,31040901-31040996,31041144-31041251
          Length = 663

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 431 HCGNVQSCRECVSLQDPHCA----WDSKEQNVHG 520
           HC +V  C E ++   PHC+    W S + + HG
Sbjct: 515 HCEDVDECSEKLACSCPHCSCKNTWGSFDCSCHG 548


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 407 IIKAVTLSHCGNVQSCRECVSLQDPHCAWDS 499
           I++ V   HC    +C  CV   D HC W S
Sbjct: 406 IVRPVRSKHCS---TCDRCVEQFDHHCPWVS 433


>02_01_0624 -
           4681834-4682298,4684250-4684398,4684479-4684557,
           4684827-4684925,4685004-4685081,4685231-4685288,
           4685814-4685913,4686000-4686008,4686105-4686138,
           4686729-4686911,4687099-4687126,4687268-4687380,
           4688253-4688459,4689212-4689511
          Length = 633

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 407 IIKAVTLSHCGNVQSCRECVSLQDPHCAWDS 499
           I++ V   HC    +C  CV   D HC W S
Sbjct: 371 IVRPVRSKHCS---TCDRCVEQFDHHCPWVS 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,984,973
Number of Sequences: 37544
Number of extensions: 353443
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)