Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20683
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) 38 0.011
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 31 1.2
SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_14517| Best HMM Match : p450 (HMM E-Value=5.7e-12) 29 4.9
SB_42491| Best HMM Match : Atrophin-1 (HMM E-Value=6.5) 28 6.5
SB_37975| Best HMM Match : UBA (HMM E-Value=4.6e-10) 28 8.5
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
Length = 829
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 18 DSRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNGNKYDV 197
D++ S EV F K HP++ ++ +P+ I+ +++ + V V
Sbjct: 240 DTKRYSVEVFKFAKEHPILSDSIKPTDKKPLFIKQGVRFTQMVVDKVSIVAGSTIKTVPV 299
Query: 198 LYIGTDDGRVIK 233
+++GTD+G V K
Sbjct: 300 MFLGTDNGTVYK 311
Score = 34.7 bits (76), Expect = 0.074
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 338 QGVPIKQMHVALTTEKLIVASGDIIKAVTLSHCGNVQSCRECVSLQDPHCAW 493
Q V I + + I +I+ T HC + SC CV +DP+C W
Sbjct: 319 QEVSILEQRDVMKDAVFIGGHSSVIRMPT-HHCAHYTSCTTCVLTRDPYCGW 369
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 269 ASVDEYSKNPVRTAVISEEQVLPQGVPIKQMHVALTTEKLIVASGDIIKAVTLSHCGNVQ 448
AS+D + PV+ S+ Q V +Q T K + +IK TLS G++
Sbjct: 1557 ASIDNTPRKPVQHPQKSKLQTKDSCVKSEQTTSVTTPVKSYTFTTPLIKPATLSFAGSIC 1616
Query: 449 SCRECVS 469
S +C S
Sbjct: 1617 STSQCKS 1623
>SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Frame = -2
Query: 628 YVVHPVTERGAYYKYQSFHVLHFVRISQDSEIVC-SQPMNILFLGVPSAVWIL**NAFSA 452
+V H V E YY Q HV H V Q +E C +Q ++ L + + + N +
Sbjct: 623 HVAHLVQENKWYYVNQVTHVAHLV---QANECYCVNQVTHVAHLVQANECYYV--NQVTH 677
Query: 451 RLHVPAVR*CYSFNNITRSHYQFFSGQSNVHLFDRYTLRQNLFFRNDC 308
H+ CY N +T H + + ++ T +L N+C
Sbjct: 678 GAHLVQANECYYVNQVT--HVAHLVQANECYYVNQVTHVAHLVQANEC 723
>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1203
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 495 SQAQCGSCNETHSLHDCTFPQ*DNVTALIISPEATINFSVVRATCICLIGTP*GRT-CSS 319
S+ C +C+ H C + ++I+ + +V TC L+ T GRT SS
Sbjct: 588 SKTNCQNCDGRHHTSKCNKHENPTQREMMITSNEVVVVNVEGITCRALLDTGAGRTFASS 647
Query: 318 EM 313
E+
Sbjct: 648 EL 649
>SB_14517| Best HMM Match : p450 (HMM E-Value=5.7e-12)
Length = 403
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 526 NRQFPNPERFLQNVEHGKTDI-CNKLPALLPGER 624
N + NP+RFL +GKT I C PA G R
Sbjct: 306 NPELFNPKRFLTEDVNGKTQIRCPSFPAFSAGHR 339
>SB_42491| Best HMM Match : Atrophin-1 (HMM E-Value=6.5)
Length = 1066
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 584 SVFPCSTFCKNLSGFGNCLFPTHEH 510
SVF CS F + S FG LFP+ H
Sbjct: 476 SVFGCSLFPSSKSVFGCSLFPSSSH 500
>SB_37975| Best HMM Match : UBA (HMM E-Value=4.6e-10)
Length = 473
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 278 DEYSKNPVRTAVISEEQVLPQGVPIKQMHVALTTEKLIVA 397
DE++ +PVR +I QVL + P+ V ++ L +A
Sbjct: 120 DEFTMDPVRLKLICNGQVLKEDSPLDSQTVTNNSQILAIA 159
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 507 CSLESQAQCGSCNETHSLHDCT 442
C L+SQ +CG CN SL T
Sbjct: 228 CGLQSQLRCGICNRRKSLTKIT 249
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 417 ALIISPEATINFSVVRATCI-CLIGTP*GRTCSSEMTAVLTGFLLYSST 274
A+ + P A NF +RA CL G P GRT + + LTG ST
Sbjct: 1084 AIRLWPTARHNFYSLRAELYGCLHGNPAGRTFCTRTSHQLTGHAQIHST 1132
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,495,678
Number of Sequences: 59808
Number of extensions: 438891
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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