Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20683
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein. 77 1e-14
AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical ... 77 1e-14
AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin re... 38 0.005
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 29 2.5
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 29 2.5
Z68336-5|CAA92740.3| 442|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF106583-4|AAD03135.1| 417|Caenorhabditis elegans Hypothetical ... 29 4.3
AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical ... 29 4.3
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 28 5.7
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 28 5.7
Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81114-1|CAB03285.1| 454|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical pr... 27 9.9
>U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein.
Length = 562
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = +3
Query: 3 GSCVEDSRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNG 182
GSC DS L + V+F+ HPL+ + +PS +A P+L+ + + + I V P+V+A+ G
Sbjct: 376 GSCSPDSTKLPENTVSFILHHPLLHRPIPS-VAAPLLVEGADRADLTQITVLPRVRAVGG 434
Query: 183 NKYDVLYIGTDDGRVIKAVNVASNKAFLTRA 275
+ YD+L+IGT DG+V+K V V N + A
Sbjct: 435 HNYDILFIGTSDGKVLKVVEVDGNATVIQSA 465
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/81 (35%), Positives = 43/81 (53%)
Frame = +2
Query: 257 GVFDASVDEYSKNPVRTAVISEEQVLPQGVPIKQMHVALTTEKLIVASGDIIKAVTLSHC 436
G D V + + VI V +GVPI +++ T E +++ S D I ++ + +C
Sbjct: 443 GTSDGKVLKVVEVDGNATVIQSATVFQRGVPI--VNLLTTKESVVIVSADEIASLPVHNC 500
Query: 437 GNVQSCRECVSLQDPHCAWDS 499
SC +CV LQDPHC WDS
Sbjct: 501 AQQTSCSKCVQLQDPHCDWDS 521
>AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical
protein Y54E5B.1a protein.
Length = 712
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = +3
Query: 3 GSCVEDSRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNG 182
GSC DS L + V+F+ HPL+ + +PS +A P+L+ + + + I V P+V+A+ G
Sbjct: 373 GSCSPDSTKLPENTVSFILHHPLLHRPIPS-VAAPLLVEGADRADLTQITVLPRVRAVGG 431
Query: 183 NKYDVLYIGTDDGRVIKAVNVASNKAFLTRA 275
+ YD+L+IGT DG+V+K V V N + A
Sbjct: 432 HNYDILFIGTSDGKVLKVVEVDGNATVIQSA 462
Score = 64.1 bits (149), Expect = 9e-11
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 GVFDASVDEYSKNPVRTAVISEEQVLPQGVPIKQMHVALTTEKLIVASGDIIKAVTLSHC 436
G D V + + VI V +GVPI +++ T E +++ S D I ++ + +C
Sbjct: 440 GTSDGKVLKVVEVDGNATVIQSATVFQRGVPI--VNLLTTKESVVIVSADEIASLPVHNC 497
Query: 437 GNVQSCRECVSLQDPHCAWDSK-EQNVHG 520
SC +CV LQDPHCAWDS + VHG
Sbjct: 498 AQQTSCSKCVQLQDPHCAWDSSIARCVHG 526
>AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin
related protein 2 protein.
Length = 654
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 326 QVLPQGVPIKQMHVALTT--EKLIVASGDIIKAVTLSHCGNVQSCRECVSLQDPHCAW 493
+VLP I M + E+LIV + + V + C +C EC++ DPHCAW
Sbjct: 426 KVLPTNSKIVDMSLYSKNNLEELIVITEQSVLKVPTATCHLASNCAECLAHGDPHCAW 483
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +3
Query: 21 SRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNGNKYDVL 200
SR E ++ ++ PL+ + + A PI I RF + + ++ YD+L
Sbjct: 343 SRANDIEELSRIRLKPLIKQKIS---ANPIYIFHGKD-RFVHVLAQEDTRDLSNRAYDIL 398
Query: 201 YIGTDDGRVIKAVNVASNK 257
Y+ T+ G ++K V +++K
Sbjct: 399 YVATNLGNILKIVVPSTDK 417
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 425 LSHCGNVQSCRECVSLQDPHCAW 493
LS C + SC EC+ DP C W
Sbjct: 442 LSTCSHHSSCTECLVSVDPLCQW 464
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 425 LSHCGNVQSCRECVSLQDPHCAW 493
LS C + SC EC+ DP C W
Sbjct: 444 LSTCSHHSSCTECLVSVDPLCQW 466
>Z68336-5|CAA92740.3| 442|Caenorhabditis elegans Hypothetical
protein F22B3.8 protein.
Length = 442
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +3
Query: 36 DEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNGNKYDVLYIG 209
DE++N+ K +P+ FL RPI+++ + R I + P + + + ++Y+G
Sbjct: 120 DELINYYKVNPICYHNTRVFLKRPIVLQ-DWELRAEGIDMTP--KKLGEGAFGIVYLG 174
>AF106583-4|AAD03135.1| 417|Caenorhabditis elegans Hypothetical
protein F23C8.7 protein.
Length = 417
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 287 SKNPVRTAVISEEQVLPQGVPIKQMHVALTTEKLIVASGDIIKAVTLSHCGNVQSC 454
SK P++ + + +L Q I+ V LT + A G++ K GNV++C
Sbjct: 94 SKEPIKKLTVLKTPILKQPWEIEHSQVELTKKLGEGAFGEVWKGKLTLKNGNVENC 149
>AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical
protein T28B4.2 protein.
Length = 260
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 225 LYHRQCRCTIHRICFHSLLELEDE 154
+Y R CRC I I FH L L +E
Sbjct: 171 MYFRWCRCHIAVIVFHKFLNLVEE 194
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 389 IVASGDIIKAVTLSHCGNVQS-CRECVSLQDPHCAW 493
I+ +IK T S C + + C C+S +DP+C W
Sbjct: 483 ILTPSKVIKMPT-SRCEALSTQCDTCLSSRDPYCGW 517
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 389 IVASGDIIKAVTLSHCGNVQS-CRECVSLQDPHCAW 493
I+ +IK T S C + + C C+S +DP+C W
Sbjct: 489 ILTPSKVIKMPT-SRCEALSTQCDTCLSSRDPYCGW 523
>Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical
protein C17D12.1b protein.
Length = 240
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 269 ASVDEYSKNPVRTAVISEEQVLPQGVPIKQMHV--ALTTEKLIVASGDIIKAVTLSHCGN 442
+S + + NPV ++ EE + + H+ + TE + D ++ HC
Sbjct: 12 SSKGQNTPNPVFSS--DEEDESDEEAVFRHDHLNRSSATEWTMCTRCDSLRPPRAHHC-- 67
Query: 443 VQSCRECVSLQDPHCAW 493
+ C+ CV D HC W
Sbjct: 68 -RVCKRCVRKMDHHCPW 83
>Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical
protein C17D12.1a protein.
Length = 302
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 269 ASVDEYSKNPVRTAVISEEQVLPQGVPIKQMHV--ALTTEKLIVASGDIIKAVTLSHCGN 442
+S + + NPV ++ EE + + H+ + TE + D ++ HC
Sbjct: 74 SSKGQNTPNPVFSS--DEEDESDEEAVFRHDHLNRSSATEWTMCTRCDSLRPPRAHHC-- 129
Query: 443 VQSCRECVSLQDPHCAW 493
+ C+ CV D HC W
Sbjct: 130 -RVCKRCVRKMDHHCPW 145
>Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical
protein F36A2.2 protein.
Length = 527
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 207 RCTIHRICFHSLLELEDER 151
R + RIC HSLLE ED R
Sbjct: 329 RAHVFRICHHSLLEYEDLR 347
>Z81114-1|CAB03285.1| 454|Caenorhabditis elegans Hypothetical
protein T04D3.1 protein.
Length = 454
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 643 QDFCCYVVHPVTERGAYYKY 584
QDF YV++ +T RG Y KY
Sbjct: 209 QDFQMYVLYIITSRGHYEKY 228
>Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical
protein T23G7.4 protein.
Length = 884
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 302 RTAVISEEQVLPQGVPIKQMHVALTTEKLIVASGDI--IKAVTLSHCG-NVQSC 454
R + Q L Q K+ + +TT+KL++A GDI I A TL++ G +Q C
Sbjct: 644 RLFIRQRPQQLAQEPGQKKGNNEITTKKLLIAVGDIEFIIAKTLNNVGKKMQEC 697
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,190
Number of Sequences: 27780
Number of extensions: 327905
Number of successful extensions: 792
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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