Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20683
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    31   0.014
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 30.7 bits (66), Expect = 0.014
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -1

Query: 278 LRSRQKRLVRGNINSFDDST--IVSADVQYIVFVSIHCLNLRMNGNSGKSVLQTDSNQ 111
           L +R +++V  + N FDD    I+ A+V+ ++  + HC+N   N N   +  Q D+NQ
Sbjct: 379 LSNRMQKIVNDDFN-FDDVNFRILGANVKELIR-NTHCVNNNQNDNIQNTNNQNDNNQ 434


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 218 W*SHQSC*CCL*QGVFDASV 277
           W   +SC CC   G  +ASV
Sbjct: 69  WQMERSCMCCQESGEREASV 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 536  NCLFPTHEHFV 504
            NCLF   EHFV
Sbjct: 1614 NCLFRKPEHFV 1624


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,293
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)