Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20683
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein ...    29   2.3  
At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ...    28   5.3  
At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containi...    28   7.0  
At2g23710.1 68415.m02831 hypothetical protein contains Pfam prof...    27   9.2  

>At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain;
           low similarity to SP:Q96GR4 Zinc finger DHHC domain
           containing protein 12 (Zinc finger protein 400) {Homo
           sapiens}
          Length = 288

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 407 IIKAVTLSHCGNVQSCRECVSLQDPHCAWDS 499
           II+ V   HC    +C+ CV   D HC W S
Sbjct: 122 IIRPVRSKHC---PTCKRCVEQFDHHCPWIS 149


>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
           ankyrin repeat family protein similar to patsas protein
           [Drosophila melanogaster] GI:6002770; contains Pfam
           profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
           finger domain
          Length = 592

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 389 IVASGDIIKAVTLSHCGNVQSCRECVSLQDPHCAWDS 499
           + A+  II+ +   HC    +C  CV   D HC W S
Sbjct: 344 LCATCKIIRPLRAKHCS---TCDRCVEQFDHHCPWVS 377


>At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 646

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
 Frame = +2

Query: 353 KQMHVALTTEKLIVASGDIIKA--VTLSHCGNVQSCREC---VSLQDPHCAWDSKEQNV- 514
           +Q+H AL T+   V++  +I +  V  S CG ++S R+C   +S +    AW++      
Sbjct: 373 QQIH-ALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYA 431

Query: 515 -HGLGTDNFRILRDSYKM-*NMERLIFVISSPLCYRVNDIATEILELKNLL 661
            HGLG  +  +          ++ + F      C     +  E LEL NL+
Sbjct: 432 QHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTG-LIQEGLELLNLM 481


>At2g23710.1 68415.m02831 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287;
            this may be a pseudogene;  the protein appears slightly
           truncated on the 3' end due to intervening stop codon.
          Length = 592

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 385 IDSGFG*YY*SCNIISLRERAIVQRMRFITRSTLRLGLQGTKCSWVGN-RQFPNPE 549
           +D G G  Y    + S RER IV++ +   RS  +  + GT+   V +    P PE
Sbjct: 451 VDDGIG--YIDPIVDSWRERLIVEKKKIFWRSLYQADIDGTRIETVDDVPAVPEPE 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,490
Number of Sequences: 28952
Number of extensions: 296188
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)