Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20682
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 165 6e-42
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 165 7e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 165 7e-42
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 5e-20
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 88 1e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 68 1e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 48 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.010
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.072
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 31 0.13
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.17
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.29
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.38
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.51
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.6
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.3
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.3
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 165 bits (401), Expect = 6e-42
Identities = 75/85 (88%), Positives = 80/85 (94%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
EKFEK+A E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFI
Sbjct: 40 EKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
KNMITGTSQADCAVLI+ GTGEF+
Sbjct: 100 KNMITGTSQADCAVLIIGGGTGEFE 124
Score = 129 bits (311), Expect = 5e-31
Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 433
+AGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGF 181
Query: 434 NPAAVAFVPISGWHGDNMLEPSTKMLGSRDGRWSVKKAKLTENASLKLSMPSCHLPA-PL 610
NP V FVP+SG+ GDNM+EP+T M + G KA + + +L ++ S PA P
Sbjct: 182 NPKTVPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 611 TSPCVFPCKTYTK 649
P P + K
Sbjct: 241 DKPLRLPLQDVYK 253
Score = 124 bits (299), Expect = 1e-29
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +1
Query: 511 WFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET 690
W++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET
Sbjct: 208 WYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET 267
Query: 691 GVLKPGTIVVF 723
GV+KPG IV F
Sbjct: 268 GVIKPGMIVTF 278
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 165 bits (400), Expect = 7e-42
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
EKFEK+A E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFI
Sbjct: 40 EKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
KNMITGTSQADCA+LI+ GTGEF+
Sbjct: 100 KNMITGTSQADCAILIIGGGTGEFE 124
Score = 129 bits (311), Expect = 5e-31
Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 433
+AGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGF 181
Query: 434 NPAAVAFVPISGWHGDNMLEPSTKMLGSRDGRWSVKKAKLTENASLKLSMPSCHLPA-PL 610
NP V FVP+SG+ GDNM+EP+T M + G KA + + +L ++ S PA P
Sbjct: 182 NPKTVPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 611 TSPCVFPCKTYTK 649
P P + K
Sbjct: 241 DKPLRLPLQDVYK 253
Score = 124 bits (299), Expect = 1e-29
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +1
Query: 511 WFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET 690
W++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET
Sbjct: 208 WYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET 267
Query: 691 GVLKPGTIVVF 723
GV+KPG IV F
Sbjct: 268 GVIKPGMIVTF 278
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 165 bits (400), Expect = 7e-42
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
EKFEK+A E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFI
Sbjct: 40 EKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
KNMITGTSQADCA+LI+ GTGEF+
Sbjct: 100 KNMITGTSQADCAILIIGGGTGEFE 124
Score = 129 bits (311), Expect = 5e-31
Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 433
+AGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGF 181
Query: 434 NPAAVAFVPISGWHGDNMLEPSTKMLGSRDGRWSVKKAKLTENASLKLSMPSCHLPA-PL 610
NP V FVP+SG+ GDNM+EP+T M + G KA + + +L ++ S PA P
Sbjct: 182 NPKTVPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 611 TSPCVFPCKTYTK 649
P P + K
Sbjct: 241 DKPLRLPLQDVYK 253
Score = 124 bits (299), Expect = 1e-29
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +1
Query: 511 WFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET 690
W++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET
Sbjct: 208 WYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVET 267
Query: 691 GVLKPGTIVVF 723
GV+KPG IV F
Sbjct: 268 GVIKPGMIVTF 278
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 92.7 bits (220), Expect = 5e-20
Identities = 43/85 (50%), Positives = 54/85 (63%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
+K +A GKGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI
Sbjct: 210 QKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFI 269
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
MI G S AD AVL+V + F+
Sbjct: 270 SGMIAGASSADFAVLVVDSSQNNFE 294
Score = 73.7 bits (173), Expect = 2e-14
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIG 430
+ G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G
Sbjct: 294 ERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVG 351
Query: 431 YNPAAVAFVPISGWHGDNMLEPSTKML 511
+ + V FVPIS G N+++ + L
Sbjct: 352 FKTSNVHFVPISAISGTNLIQKDSSDL 378
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 556 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 693
G L+ ALD ++PP +P KPLRL + DVY+ TV GRVE G
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAG 428
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 88.2 bits (209), Expect = 1e-18
Identities = 38/85 (44%), Positives = 57/85 (67%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
EK E++A+E GK S+ +W LD ERE+G T+++ FET +++DAPGH+ ++
Sbjct: 271 EKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYV 330
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
NMI G SQAD VL+++A GEF+
Sbjct: 331 TNMINGASQADIGVLVISARRGEFE 355
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +2
Query: 233 SCRYR*IQAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 412
S R +AG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S
Sbjct: 348 SARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM 407
Query: 413 YIKKI-GYNPAA-VAFVPISGWHGDNM 487
+++++ GYN V ++P+S + G N+
Sbjct: 408 FLRRVAGYNSKTDVKYMPVSAYTGQNV 434
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 68.1 bits (159), Expect = 1e-12
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +3
Query: 15 KKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 194
K ++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMI
Sbjct: 75 KCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMI 134
Query: 195 TGTSQADCAVLIVAAGTGE 251
TG + D A+++V+A G+
Sbjct: 135 TGAATMDGAIIVVSATDGQ 153
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +1
Query: 565 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 708
L+EA+D+ + P R TD P + ++DV+ I G GTV GRVE G LK G
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKG 282
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 278 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 415
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 60 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 240 GTG 248
G
Sbjct: 127 SAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 63 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 230
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 231 VAAGTG 248
V A G
Sbjct: 155 VDASQG 160
Score = 29.1 bits (62), Expect = 0.67
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 529 VERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 708
V K GK + L E + I PP + PLR L D + G + + R+ G +K G
Sbjct: 214 VSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRIMEGFIKKG 273
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 33 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 206
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 207 QADCAVLIVAAGTG 248
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.072
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Frame = +3
Query: 63 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 185
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 186 NMITGTSQADCAVLIVAAGTG 248
+ D AVL++ A +G
Sbjct: 161 EVERALRVLDGAVLVLCAVSG 181
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 311 LGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNML 490
L + + + KMD E + E +F + + S++K+ F+PISG G N+
Sbjct: 407 LSISSYMFAITKMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLT 464
Query: 491 EPSTKML 511
S + L
Sbjct: 465 SISQEKL 471
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 141 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 236
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 138 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 248
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 66 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 188
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 150 IIDAPGHRDFIKNMITGTSQADCAVLIV 233
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 138 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 233
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 138 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 233
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 81 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 233
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Frame = -3
Query: 707 PGFNTPVSTLPTGTVPIP-PILYTSCR--GRRRGLSVGRAGGRMASRASMRH--FPSALP 543
P +N P G+VP+P P S R R S GR S H PS LP
Sbjct: 314 PNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLP 373
Query: 542 SLRSTCHPLNQAF 504
P F
Sbjct: 374 PADGVPKPTPDGF 386
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 590 RMASRASMRHFPSALPSLRSTCHPLNQAFWLKAPTCCLRAIQKW 459
R SR+S R S PS+ ST P N++F K C A +KW
Sbjct: 1336 RHLSRSSSR--ASKKPSIVSTTGPFNESFSAKPVEPC--ASEKW 1375
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 369 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 458
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 698 NTPVSTLPTGTVPIPPIL 645
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,703
Number of Sequences: 5004
Number of extensions: 71804
Number of successful extensions: 257
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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